Browse Element(s) Details


OsAffx.30013.2.S1_at

Description tigr:9634.m02692
TID=OsAffx.30013.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g157204/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g334104/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g377903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g324701/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15670Os.49767.1.S1_x_at1/1112+8947495..8955181retrotransposon protein, putative, unclassified, expressed
LOC_Os12g15670Os.46012.3.S1_x_at1/1112+8947495..8955181retrotransposon protein, putative, unclassified, expressed
LOC_Os12g15680OsAffx.7606.1.S1_at11/1112+8958256..8961411Multicopper oxidase family protein, expressed
LOC_Os12g15680Os.17659.1.S1_at11/1112+8958256..8961411Multicopper oxidase family protein, expressed
LOC_Os12g15690NANA12+8963451..8965639retrotransposon protein, putative, unclassified
LOC_Os12g15700NANA12+8966809..8972221retrotransposon protein, putative, unclassified
LOC_Os12g15720OsAffx.30013.1.S1_x_at5/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.3.S1_x_at5/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.2.S1_at4/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.3.S1_at3/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15720OsAffx.30013.4.S1_at2/1112+8974999..8976532retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g15730OsAffx.8371.1.S1_at2/1112+8983519..8985508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15730OsAffx.8372.1.S1_at2/1112+8983519..8985508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g15740NANA12+8985726..8986406transposon protein, putative, unclassified
LOC_Os12g15750NANA12+8988658..8993166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15760NANA12+8993416..8995314retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30013.2.S1_at--979--5493Chr06:28537959..28538443 (25 bp)
GAAAAGCTAAGGCTAATGCAGCGAC
NONE
OsAffx.30013.2.S1_at--865--9031Chr06:16019394..16019418 (25 bp)
TGCAGCGACTTCTTCGAATGACTCG
NONE
OsAffx.30013.2.S1_at--189--4611Chr06:16019390..16019414 (25 bp)
GCGACTTCTTCGAATGACTCGGATA
NONE
OsAffx.30013.2.S1_at--1049--10551Chr06:16019385..16019409 (25 bp)
TTCTTCGAATGACTCGGATAGCGAT
NONE
OsAffx.30013.2.S1_at--486--6434Chr12:8976038..8976062 (25 bp)
GATCTTCTCACGATGTCAAGTGCAC
LOC_Os12g15720
OsAffx.30013.2.S1_at--270--9695Chr12:8976045..8976069 (25 bp)
TCACGATGTCAAGTGCACAGTCTAA
LOC_Os12g15720
OsAffx.30013.2.S1_at--989--6256Chr12:8976049..8976073 (25 bp)
GATGTCAAGTGCACAGTCTAAGGAT
LOC_Os12g15720
OsAffx.30013.2.S1_at--240--9736Chr12:8976053..8976077 (25 bp)
TCAAGTGCACAGTCTAAGGATGCAG
LOC_Os12g15720
OsAffx.30013.2.S1_at--237--7511Chr06:16019310..16019334 (25 bp)
GTGGATATTAGATTTAGCTAGCTTG
NONE
OsAffx.30013.2.S1_at--385--10451Chr06:16019303..16019327 (25 bp)
TTAGATTTAGCTAGCTTGTTTCATG
NONE
OsAffx.30013.2.S1_at--32--3891Chr06:16018924..16018948 (25 bp)
CTGGGATAGGAATTGTTTTTGTGGC
NONE
Target Sequence 
GAAAAGCTAAGGCTAATGCAGCGACTTCTTCGAATGACTCGGATAGCGATGGTTGTGATCTTCTCACGATGTCAAGTGCA
CAGTCTAAGGATGCAGAAGTGTGGATATTAGATTTAGCTAGCTTGTTTCATGTGACGCCAAGGAAGGAGTGGTTCTCTTC
ATACAAGTCTGGTGAGTGTGGTTTTGTCTACTTAGGCGATGACACAAGTTATCCAGCCGTGGGAGTAGGTGAAGTCAAAA
TTAAGCTAGAAGATGGAGGGCTAAAGAGGAATCTGATTTCGCTTGGAACCTTGCATGAAGAAGGGTTAATATTCCACGGT
AATCGGAATAGGAAGACCATTGAGATCATGAAGGGCAAGATGACTGTGATGACTGGAGAAAAGGTGGAGTCGCATCTTTA
CAAGCTGCAAGGGTGCACTGTTGCAGGTGGAGTCCAGGAGGAAGCGGTTGCTGGGATAGGAATTGTTTTTGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30013.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis