Browse Element(s) Details


OsAffx.30026.1.S1_at

Description tigr:9637.m02249
TID=OsAffx.30026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2591011/11Basic 7S globulin precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25890OsAffx.30025.1.S1_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.30025.1.S1_x_at11/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25890OsAffx.27472.1.S1_x_at1/119+15531920..15534766trehalose-6-phosphate synthase, putative, expressed
LOC_Os09g25900Os.18770.1.S1_at6/119+15545365..15548202glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30026.1.S1_at--973--4811Chr09:15559197..15559221 (25 bp)
GCTCATCACCAGGACGACGGACAGG
LOC_Os09g25910
OsAffx.30026.1.S1_at--229--9611Chr09:15559199..15559223 (25 bp)
TCATCACCAGGACGACGGACAGGTC
LOC_Os09g25910
OsAffx.30026.1.S1_at--1046--3931Chr09:15559214..15559238 (25 bp)
CGGACAGGTCGAGCGAATACTTCAT
LOC_Os09g25910
OsAffx.30026.1.S1_at--1075--7191Chr09:15559221..15559245 (25 bp)
GTCGAGCGAATACTTCATCAGCCTG
LOC_Os09g25910
OsAffx.30026.1.S1_at--524--3091Chr09:15559229..15559253 (25 bp)
AATACTTCATCAGCCTGAAGCGCGT
LOC_Os09g25910
OsAffx.30026.1.S1_at--1061--3551Chr09:15559236..15559260 (25 bp)
CATCAGCCTGAAGCGCGTCGTGGTG
LOC_Os09g25910
OsAffx.30026.1.S1_at--391--1491Chr09:15559450..15559474 (25 bp)
AGCAAGGTGGAGAGCAGCGCCATCA
LOC_Os09g25910
OsAffx.30026.1.S1_at--738--2891Chr09:15559453..15559477 (25 bp)
AAGGTGGAGAGCAGCGCCATCACAG
LOC_Os09g25910
OsAffx.30026.1.S1_at--116--8811Chr09:15559499..15559523 (25 bp)
TGTTCGAGCTGCACGTGCAGAGCGA
LOC_Os09g25910
OsAffx.30026.1.S1_at--1105--1451Chr09:15559691..15559715 (25 bp)
AGAAGTCGCGGTTGGGCTTCAGCCC
LOC_Os09g25910
OsAffx.30026.1.S1_at--1125--7891Chr09:15559700..15559724 (25 bp)
GGTTGGGCTTCAGCCCAAACCTTGG
LOC_Os09g25910
Target Sequence 
GCTCATCACCAGGACGACGGACAGGTCGAGCGAATACTTCATCAGCCTGAAGCGCGTCGTGGTGGACGACCGCGCCGTGC
CGCTGAACGCGACGCTGCTCGACGTCGGCACCAAGCTGAGCACGGTCTCGCCCTACACCGTGCTGGAGACCTCCATCCAC
GAGGCGGTCACGCGCGCGTTCGCGGCGTCGATGGCCACGGCGGGGATCCCGCGCGTCCCGGCCGTGGCGCCGTTCGAGCT
GTGCTACGACGGGAGCAAGGTGGAGAGCAGCGCCATCACAGGGGAGCCGGCCGTGCCGGTGGTGTTCGAGCTGCACGTGC
AGAGCGAGGTGAGGTCGAAGGTGGCGCCGTGGATGGTGTCGGGGGCGAACCTGATGGCGCGCGCCGACGGCGGGGCGCTC
TGCCTCGCCGTGGTGGACGGCGGAGCGGCGCCGGAGGCGCCGGTGGTGATCGGCGGCCACATGATGGAGGAGATCCTGCT
GGTGTTCGACCTGGAGAAGTCGCGGTTGGGCTTCAGCCCAAACCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis