Browse Element(s) Details


OsAffx.30045.1.S1_at

Description tigr:9637.m02338
TID=OsAffx.30045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2676011/11DNA repair metallo-beta-lactamase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26700Os.6087.1.S1_at10/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26700OsAffx.4491.1.S1_at1/119+16223957..16228369Choline/ethanolamine kinase family protein, expressed
LOC_Os09g26710OsAffx.30044.1.S1_at11/119+16228908..16230064hypothetical protein
LOC_Os09g26720NANA9+16231928..16232890retrotransposon protein, putative, unclassified
LOC_Os09g26730Os.9366.1.S1_at10/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26730Os.16370.1.S1_at4/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26740NANA9+16244789..16245313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26750NANA9+16245598..16246799hypothetical protein
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30045.1.S1_at--87--5631Chr09:16252656..16252679 (24 bp)
GACACAACCTACTGTAATCCACGAT
LOC_Os09g26760
OsAffx.30045.1.S1_at--341--6491Chr09:16252528..16252550 (23 bp)
GATACGACTTCCCAACTCAAGAGAT
LOC_Os09g26760
OsAffx.30045.1.S1_at--177--9871Chr09:16252498..16252522 (25 bp)
TACAGTTTGTTATCGAGGCTATCCA
LOC_Os09g26760
OsAffx.30045.1.S1_at--479--3071Chr09:16252242..16252266 (25 bp)
AATCATGCACTGGTTTACAGCCAAT
LOC_Os09g26760
OsAffx.30045.1.S1_at--318--6651Chr09:16252196..16252220 (25 bp)
GTTGTTCCTATGTGGACTCTGGCAA
LOC_Os09g26760
OsAffx.30045.1.S1_at--152--8131Chr09:16252183..16252207 (25 bp)
GGACTCTGGCAAGCTTCAAGCGGAT
LOC_Os09g26760
OsAffx.30045.1.S1_at--41--4691Chr09:16252164..16252188 (25 bp)
GCGGATGAAGTATTTGTCCACTCAA
LOC_Os09g26760
OsAffx.30045.1.S1_at--822--7271Chr09:16251772..16252173 (25 bp)
GTCCACTCAATATGCTGATCGGTTT
LOC_Os09g26760
OsAffx.30045.1.S1_at--422--491Chr09:16251755..16251779 (25 bp)
ATCGGTTTGACCTTATAGTTGCATT
LOC_Os09g26760
OsAffx.30045.1.S1_at--711--291Chr09:16251272..16251296 (25 bp)
ATAGCAGCTTCACAGAACTCCGGGA
LOC_Os09g26760
OsAffx.30045.1.S1_at--187--6791Chr09:16251243..16251267 (25 bp)
GTTAGGTTCATCTCACCAGAGCACA
LOC_Os09g26760
Target Sequence 
GACACAACCTACTGTAATCCACGATACGACTTCCCAACTCAAGAGATTGTAATACAGTTTGTTATCGAGGCTATCCAAGC
TGAAGCTTTCAATCCAAAGACACTTTTTTTGATTGGCAGCTATACAATTGGTAAAGAAAGACTGTATATGGAGGTTGCTC
GTTTGCTTCAGAAGAAAATATATGTTGGAGCTGCAAAGTTGCAAATATTAAAGCACTTGGGGCTTCCTCAGGAAATCATG
CACTGGTTTACAGCCAATGAAGCTGAAAGTCACATACATGTTGTTCCTATGTGGACTCTGGCAAGCTTCAAGCGGATGAA
GTATTTGTCCACTCAATATGCTGATCGGTTTGACCTTATAGTTGCATTTTGTCCAACTGGTTGGTCATTTGGTAAAGGGA
AGAAAAGGACACCAGGCAGAAAATGGCAACAAGGAGCAATAATCAGATATGAAGTGCCCTACAGTGAACATAGCAGCTTC
ACAGAACTCCGGGAGTTTGTTAGGTTCATCTCACCAGAGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis