Browse Element(s) Details


OsAffx.30052.1.S1_at

Description tigr:9637.m02375
TID=OsAffx.30052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2712011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein
LOC_Os09g27160Os.55222.1.S1_at11/119+16515132..16516766expressed protein
LOC_Os09g27160Os.56118.1.S1_at9/119+16515132..16516766expressed protein
LOC_Os09g27170NANA9+16518774..16519127hypothetical protein
LOC_Os09g27180NANA9+16520438..16524392retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30052.1.S1_at--1146--7891Chr09:16495383..16495407 (25 bp)
GGATTCGCCAGAGGGCGACCGAAAA
LOC_Os09g27120
OsAffx.30052.1.S1_at--299--1091Chr09:16495336..16495360 (25 bp)
AGGGCTCGATTCTTCGGAGCTCGTG
LOC_Os09g27120
OsAffx.30052.1.S1_at--985--8071Chr09:16495321..16495345 (25 bp)
GGAGCTCGTGCTACTTCAAGGATTC
LOC_Os09g27120
OsAffx.30052.1.S1_at--589--7311Chr09:16495314..16495338 (25 bp)
GTGCTACTTCAAGGATTCACGAACT
LOC_Os09g27120
OsAffx.30052.1.S1_at--903--7911Chr09:16495302..16495326 (25 bp)
GGATTCACGAACTCATTTCAAGCTT
LOC_Os09g27120
OsAffx.30052.1.S1_at--1125--1831Chr09:16495296..16495320 (25 bp)
ACGAACTCATTTCAAGCTTCACGGG
LOC_Os09g27120
OsAffx.30052.1.S1_at--646--5791Chr09:16495266..16495290 (25 bp)
GACGCGGCTCCAAGGAGACCCACGG
LOC_Os09g27120
OsAffx.30052.1.S1_at--638--8351Chr09:16495243..16495267 (25 bp)
GGCGGCGATCTAGCATCGGCACAGA
LOC_Os09g27120
OsAffx.30052.1.S1_at--626--8251Chr09:16494795..16494819 (25 bp)
GGCATCCGGGTTTTGGCTACAAGCG
LOC_Os09g27120
OsAffx.30052.1.S1_at--36--691Chr09:16494757..16494781 (25 bp)
ATGACGATGGCAATGTCGCCAAAAA
LOC_Os09g27120
OsAffx.30052.1.S1_at--1025--2571Chr09:16494738..16494762 (25 bp)
CAAAAAGGCGGTGCAAAGTTTGGCG
LOC_Os09g27120
Target Sequence 
GGATTCGCCAGAGGGCGACCGAAAACGGCAACCTCGCCGGAGCGGCGAGGGCTCGATTCTTCGGAGCTCGTGCTACTTCA
AGGATTCACGAACTCATTTCAAGCTTCACGGGGGCACGACGCGGCTCCAAGGAGACCCACGGCGGCGATCTAGCATCGGC
ACAGAGGTGGCGAGCGGCGGAGAGAAGGATGGGAGATGGCGAGGCTTTAAAGGGTGGATTGAACCGGGGCTTGGAGGAGA
AGGAAGCCGTGGGGGTGGATGCCGAGGTGGTGCGGTCGCACGACCGGCATCCGGGTTTTGGCTACAAGCGGCGGGGACCA
TGGATGACGATGGCAATGTCGCCAAAAAGGCGGTGCAAAGTTTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis