Browse Element(s) Details


OsAffx.30098.1.S1_at

Description tigr:9637.m02707
TID=OsAffx.30098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g303101/11Nuclear transcription factor Y subunit gamma, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30098.1.S1_at--86--4531Chr09:18451233..18451649 (25 bp)
GCCCCGCCGCCGAATTTGGTTGTGT
LOC_Os09g30310
OsAffx.30098.1.S1_at--495--4951Chr09:18451694..18451718 (25 bp)
GCATTTTAGCTTACAAGTCCCTCGT
NONE
OsAffx.30098.1.S1_at--1162--4891Chr09:18451702..18451726 (25 bp)
GCTTACAAGTCCCTCGTATGCAGTA
NONE
OsAffx.30098.1.S1_at--91--7251Chr09:18451710..18451729 (20 bp)
GTCCCTCGTATGCAGTAAGGGCATA
NONE
OsAffx.30098.1.S1_at--827--5371Chr09:18452644..18452666 (23 bp)
GAAGAACATCATTGTTACGTTCCAA
NONE
OsAffx.30098.1.S1_at--500--8791Chr09:18452654..18452678 (25 bp)
TGTTACGTTCCAATTTGTTCATGTG
NONE
OsAffx.30098.1.S1_at--763--8791Chr09:18452669..18452693 (25 bp)
TGTTCATGTGACTTTCATCCTGTTC
NONE
OsAffx.30098.1.S1_at--494--7371Chr09:18452676..18452700 (25 bp)
GTGACTTTCATCCTGTTCTATGTGG
NONE
OsAffx.30098.1.S1_at--631--791Chr09:18452695..18452719 (25 bp)
ATGTGGATCATCTACCCAGGCAGGA
NONE
OsAffx.30098.1.S1_at--920--9951Chr09:18452707..18452731 (25 bp)
TACCCAGGCAGGAGCATTCCATGAT
NONE
OsAffx.30098.1.S1_at--776--8071Chr09:18452717..18452741 (25 bp)
GGAGCATTCCATGATACTGCTTGCA
NONE
Target Sequence 
GCCCCGCCGCCGAATTTGGTTGTGTAAGGAAACTATTAAAGGTTGTGCGAGGGCAGTGTGGCTATCGCTGCATTTTAGCT
TACAAGTCCCTCGTATGCAGTAAGGGCATAAAGAAGAACATCATTGTTACGTTCCAATTTGTTCATGTGACTTTCATCCT
GTTCTATGTGGATCATCTACCCAGGCAGGAGCATTCCATGATACTGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis