Browse Element(s) Details


OsAffx.30111.1.S1_at

Description tigr:9637.m02812
TID=OsAffx.30111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3214011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein
LOC_Os09g32140OsAffx.30111.1.S1_at11/119+19184484..19185026hypothetical protein
LOC_Os09g32150Os.11004.1.S1_at11/119+19185445..19187541expressed protein
LOC_Os09g32160OsAffx.30112.1.S1_at11/119+19190199..19191453hypothetical protein
LOC_Os09g32170OsAffx.17982.1.S1_at8/119+19194474..19195520hypothetical protein
LOC_Os09g32170OsAffx.30112.1.S1_at1/119+19194474..19195520hypothetical protein
LOC_Os09g32180OsAffx.6465.1.S1_at11/119+19199938..19208076hypothetical protein
LOC_Os09g32190OsAffx.30113.1.S1_at11/119+19209497..19212232tRNA-splicing endonuclease positive effector, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30111.1.S1_at--373--8471Chr09:19184731..19184755 (25 bp)
TGGCGGAGTTCTACGCGACGGACTT
LOC_Os09g32140
OsAffx.30111.1.S1_at--892--8031Chr09:19184727..19184751 (25 bp)
GGAGTTCTACGCGACGGACTTCAGC
LOC_Os09g32140
OsAffx.30111.1.S1_at--832--1211Chr09:19184725..19184749 (25 bp)
AGTTCTACGCGACGGACTTCAGCAA
LOC_Os09g32140
OsAffx.30111.1.S1_at--693--9531Chr09:19184722..19184746 (25 bp)
TCTACGCGACGGACTTCAGCAAGGC
LOC_Os09g32140
OsAffx.30111.1.S1_at--863--9291Chr09:19184692..19184716 (25 bp)
TCCGCGAGAGGTTCGCCCGCGAGTC
LOC_Os09g32140
OsAffx.30111.1.S1_at--344--2211Chr09:19184623..19184647 (25 bp)
ACAACTTCGGCGACATGCGGGGGTT
LOC_Os09g32140
OsAffx.30111.1.S1_at--1110--10611Chr09:19184600..19184624 (25 bp)
TTCGAGTACGCGCACGACACCGAGG
LOC_Os09g32140
OsAffx.30111.1.S1_at--57--1191Chr09:19184596..19184620 (25 bp)
AGTACGCGCACGACACCGAGGAGTA
LOC_Os09g32140
OsAffx.30111.1.S1_at--248--9971Chr09:19184573..19184597 (25 bp)
TACCACCTGGGCATGCCGTTCGGCG
LOC_Os09g32140
OsAffx.30111.1.S1_at--1091--9611Chr09:19184545..19184569 (25 bp)
TCATGGCGTGCATCGCCGTGTACCA
LOC_Os09g32140
OsAffx.30111.1.S1_at--1024--4351Chr09:19184523..19184547 (25 bp)
CCAGCTGTGGAAGGCCGCGCCGTGG
LOC_Os09g32140
Target Sequence 
TGGCGGAGTTCTACGCGACGGACTTCAGCAAGGCCGCCGTCCGCGAGAGGTTCGCCCGCGAGTCGAGGGAGGCGGCGGCG
GCCGCCGGCGTGTTCCGGCCGCTCGCCGACAACTTCGGCGACATGCGGGGGTTCGAGTACGCGCACGACACCGAGGAGTA
CCACCTGGGCATGCCGTTCGGCGCCCTCATGGCGTGCATCGCCGTGTACCAGCTGTGGAAGGCCGCGCCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis