Browse Element(s) Details


OsAffx.30162.1.S1_at

Description tigr:9637.m03134
TID=OsAffx.30162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3704011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37000Os.15703.1.S1_at11/119+21338282..2134172726S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os09g37006Os.9612.1.S1_at11/119+21343056..21346171expressed protein
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30162.1.S1_at--18--6511Chr09:21369105..21369129 (25 bp)
GATATCGTCGATTGCTCCTGATAGG
LOC_Os09g37040
OsAffx.30162.1.S1_at--649--1131Chr09:21369133..21369157 (25 bp)
AGTGCTCCACCTTTGGTCGTGATTT
LOC_Os09g37040
OsAffx.30162.1.S1_at--793--8731Chr09:21369157..21369181 (25 bp)
TGTCATGACTGGTACACTACGCTGT
LOC_Os09g37040
OsAffx.30162.1.S1_at--351--2671Chr09:21369196..21369220 (25 bp)
AAGCGGGTAGCTTTCACCATGAGAA
LOC_Os09g37040
OsAffx.30162.1.S1_at--306--1651Chr09:21369398..21369422 (25 bp)
AGCGCATGGAGCACCTGTCGGAGAA
LOC_Os09g37040
OsAffx.30162.1.S1_at--854--1411Chr09:21369464..21369488 (25 bp)
AGAAAGCGAAGCACCACGCCTGTAT
LOC_Os09g37040
OsAffx.30162.1.S1_at--853--311Chr09:21369494..21369518 (25 bp)
ATACGCACGATGTTACTCTCAACGG
LOC_Os09g37040
OsAffx.30162.1.S1_at--350--2431Chr09:21369514..21369538 (25 bp)
AACGGGTTCAAGATCGGCCTGGCCA
LOC_Os09g37040
OsAffx.30162.1.S1_at--385--9251Chr09:21369550..21369574 (25 bp)
TCGCTGACCGAATTCTCCAAGGATT
LOC_Os09g37040
OsAffx.30162.1.S1_at--276--2911Chr09:21369568..21369592 (25 bp)
AAGGATTCCGTCAAACTCTACGAAG
LOC_Os09g37040
OsAffx.30162.1.S1_at--912--9831Chr09:21369586..21369610 (25 bp)
TACGAAGACCTTCTAACGCATGCCG
LOC_Os09g37040
Target Sequence 
GATATCGTCGATTGCTCCTGATAGGTCCAGTGCTCCACCTTTGGTCGTGATTTGTCATGACTGGTACACTACGCTGTCAA
AGTTTCAAAACAAGCGGGTAGCTTTCACCATGAGAAACTTCATCAGAAGCGTGAGAGTGCTATGGCTCAAGCAAGGGGAA
GAGCAACAGCAGAAAAGAAAGGTGGACAGCCTCGCGAAAGAGATGGACAAGAAGATCAGTGCTTACAAGAGAGCAGAGAA
CAAGGTTATTGAGACCAAGCTTCTGGAGCACAGACCTGAGCAGGACGCGAAGCAGCGCATGGAGCACCTGTCGGAGAAGA
AGGAAATGCTGAATGTGCTGAGGAAGAGGGTCGAGGCCGAGAAAGCGAAGCACCACGCCTGTATGCGCGATACGCACGAT
GTTACTCTCAACGGGTTCAAGATCGGCCTGGCCAGCATATTCGAGTCGCTGACCGAATTCTCCAAGGATTCCGTCAAACT
CTACGAAGACCTTCTAACGCATGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis