Browse Element(s) Details


OsAffx.3017.1.S1_x_at

Description tigr:9630.m04867
TID=OsAffx.3017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4969011/11expressed protein
LOC_Os10g376802/11hypothetical protein
LOC_Os03g059901/11hypothetical protein
LOC_Os07g254101/11metallopeptidase M24 family protein, putative, expressed
LOC_Os06g462401/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein
LOC_Os02g49670OsAffx.3016.1.S1_x_at11/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49670Os.47935.1.S1_at10/112+30346830..30350609Zinc knuckle family protein, expressed
LOC_Os02g49680Os.7676.1.S1_at11/112+30356008..30357871calcium sensing receptor, putative, expressed
LOC_Os02g49690OsAffx.3017.1.S1_x_at11/112+30358538..30359950expressed protein
LOC_Os02g49690Os.5392.1.S1_at9/112+30358538..30359950expressed protein
LOC_Os02g49700Os.5933.1.S1_at9/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49700Os.57545.1.S1_x_at6/112+30375434..30377635Homeobox domain containing protein, expressed
LOC_Os02g49710NANA2+30384862..30387384Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0004497molecular_functionmonooxygenase activity
GO:0008235molecular_functionmetalloexopeptidase activity
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3017.1.S1_x_at--905--9331Chr02:30359522..30359546 (25 bp)
TCGCCGACATGGACTGTGGTGTTGT
LOC_Os02g49690
OsAffx.3017.1.S1_x_at--386--7411Chr02:30359540..30359564 (25 bp)
GTGTTGTGGAGGGCCGCGCGTGGAT
LOC_Os02g49690
OsAffx.3017.1.S1_x_at--861--5131Chr02:30359600..30359624 (25 bp)
GCAACAAGGAAACCGACACCGAGAG
LOC_Os02g49690
OsAffx.3017.1.S1_x_at--42--1652Chr02:30359731..30359755 (25 bp)
AGCGCCGCCTCCACGTTGGACAAAA
LOC_Os02g49690
OsAffx.3017.1.S1_x_at--330--9192Chr02:30359740..30359764 (25 bp)
TCCACGTTGGACAAAACCACCTCCG
LOC_Os02g49690
OsAffx.3017.1.S1_x_at--1090--92714Chr10:19834849..19834869 (21 bp)
TCCGAAACCACCGAGGGAGGTGATT
LOC_Os10g37680
OsAffx.3017.1.S1_x_at--202--10733Chr11:28243851..28243875 (25 bp)
AGGGAGGTGATTTGCTCTGGTTTTT
NONE
OsAffx.3017.1.S1_x_at--438--7659Chr11:28243852..28243876 (25 bp)
GGGAGGTGATTTGCTCTGGTTTTTA
NONE
OsAffx.3017.1.S1_x_at--476--61311Chr11:28243854..28243878 (25 bp)
GAGGTGATTTGCTCTGGTTTTTAGA
NONE
OsAffx.3017.1.S1_x_at--175--7757Chr11:28243856..28243880 (25 bp)
GGTGATTTGCTCTGGTTTTTAGAGA
NONE
OsAffx.3017.1.S1_x_at--166--6534Chr02:30359782..30359806 (25 bp)
GATTTGCTCTGGTTTTTAGAGAAAA
LOC_Os02g49690
Target Sequence 
TCGCCGACATGGACTGTGGTGTTGTGGAGGGCCGCGCGTGGATGCACCGCGTCCACCTCGGCTGCCTCATCTTCCTCCGC
AACAAGGAAACCGACACCGAGAGGATGGCACGCATCGAGGCCGCCTCGGACACCTCCTCCTCGGCGACTCCATCAGCGCC
GGCGGCGGCGCCGTGGCCGCCGTCCCCGCCCCCGCCGTCACGCACGCCGAGCGCCGCCTCCACGTTGGACAAAACCACCT
CCGAAACCACCGAGGGAGGTGATTTGCTCTGGTTTTTAGAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3017.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis