Browse Element(s) Details


OsAffx.30173.1.S1_at

Description tigr:9637.m03189
TID=OsAffx.30173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g375809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein
LOC_Os09g37590OsAffx.18031.1.S1_at11/119+21666226..21673416Plant protein family protein, expressed
LOC_Os09g37600Os.5985.1.S1_at11/119+21676997..21679762LysM domain containing protein, expressed
LOC_Os09g37610Os.13921.2.S1_a_at11/119+21680930..21687019MATE efflux protein, putative, expressed
LOC_Os09g37620Os.24834.1.S1_at11/119+21685571..21688242Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30173.1.S1_at--831--8491Chr09:21661477..21661501 (25 bp)
TGGTACACACTTGGTCTTTTTGGGA
LOC_Os09g37580
OsAffx.30173.1.S1_at--98--10751Chr09:21661577..21661601 (25 bp)
TTGACGCAAGTTCACCTCATAGCAC
LOC_Os09g37580
OsAffx.30173.1.S1_at--723--9811Chr09:21661797..21661821 (25 bp)
TAACTGTTCTGGGAGTGTCAAGCAA
LOC_Os09g37580
OsAffx.30173.1.S1_at--874--7631NONE
GGGACCACACTTCTTCACAATAGTT
NONE
OsAffx.30173.1.S1_at--781--8171Chr09:21662194..21662218 (25 bp)
GGAAGCCAGGCTATCTTGTCTGAAG
LOC_Os09g37580
OsAffx.30173.1.S1_at--640--5391Chr09:21662215..21662239 (25 bp)
GAAGCATTGTTTGGCATTGGGTCTC
LOC_Os09g37580
OsAffx.30173.1.S1_at--58--31Chr09:21662230..21662254 (25 bp)
ATTGGGTCTCCCCTTGACATTACAC
LOC_Os09g37580
OsAffx.30173.1.S1_at--1087--2311Chr09:21662263..21662287 (25 bp)
AAAGGTGTTACACTTCCTCACATAG
LOC_Os09g37580
OsAffx.30173.1.S1_at--1136--271Chr09:21662284..21662308 (25 bp)
ATAGGTGGTCACTCTGCAACGAAGT
LOC_Os09g37580
OsAffx.30173.1.S1_at--772--2591Chr09:21662301..21662325 (25 bp)
AACGAAGTACCGTCTTGCCTCAGTG
LOC_Os09g37580
OsAffx.30173.1.S1_at--794--10691NONE
TTGCCTCAGTGATTTGCTACGTTGA
NONE
Target Sequence 
TGGTACACACTTGGTCTTTTTGGGACAAGATTGAAGCAACTTATGAGCTGCAGATGTGGAGAGTGGTTTGGGGAAGAATA
TATTTTGCTTTTCCATAAACTTGACGCAAGTTCACCTCATAGCACAAAGATCAATTGCTTTGATGAGCTTCCAATGTTAA
TGGATTATCAGTCCGATTGGGAGAGAAGATGCAATAACTGTTCTGGGAGTGTCAAGCAAATTGGTTGTTTTCTTTCAAAG
GGACCACACTTCTTCACAATAGTTATGAAGGATTGGCTGGGTAGCGATGGAAGCCAGGCTATCTTGTCTGAAGCATTGTT
TGGCATTGGGTCTCCCCTTGACATTACACTTCTCTACAAAGGTGTTACACTTCCTCACATAGGTGGTCACTCTGCAACGA
AGTACCGTCTTGCCTCAGTGATTTGCTACGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis