Browse Element(s) Details


OsAffx.30175.1.S1_at

Description tigr:9637.m03202
TID=OsAffx.30175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3769011/11Flavin-binding monooxygenase-like family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37650OsAffx.30174.1.S1_at11/119+21697414..21701076Flavin-binding monooxygenase-like family protein, expressed
LOC_Os09g37660NANA9+21702751..21703977retrotransposon protein, putative, unclassified
LOC_Os09g37670OsAffx.18033.1.S1_at10/119+21707386..21708868hypothetical protein
LOC_Os09g37680OsAffx.18034.1.S1_at11/119+21714187..21715179hypothetical protein
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30175.1.S1_at--821--4011Chr09:21724398..21724422 (25 bp)
CGTCATCAAGAGGTCGGCGAAGTCC
LOC_Os09g37690
OsAffx.30175.1.S1_at--465--1331Chr09:21724390..21724414 (25 bp)
AGAGGTCGGCGAAGTCCTTCACCTT
LOC_Os09g37690
OsAffx.30175.1.S1_at--583--7271Chr09:21724310..21724334 (25 bp)
GTCCAGGCCGACCTGGTGATCCTCG
LOC_Os09g37690
OsAffx.30175.1.S1_at--628--1871Chr09:21724267..21724291 (25 bp)
ACGAGAAGCTGAGGCGCATGTTCGC
LOC_Os09g37690
OsAffx.30175.1.S1_at--179--2691Chr09:21724262..21724286 (25 bp)
AAGCTGAGGCGCATGTTCGCGTCGC
LOC_Os09g37690
OsAffx.30175.1.S1_at--986--9311Chr09:21724241..21724265 (25 bp)
TCGCGCCGGGTGAGGGACATCGTCG
LOC_Os09g37690
OsAffx.30175.1.S1_at--318--7831Chr09:21724141..21724165 (25 bp)
GGTACTCGGAGAGCGCGACGAACAT
LOC_Os09g37690
OsAffx.30175.1.S1_at--688--5491Chr09:21724122..21724146 (25 bp)
GAACATCCAGACGTGCGAGATGCTG
LOC_Os09g37690
OsAffx.30175.1.S1_at--1128--1391Chr09:21724114..21724138 (25 bp)
AGACGTGCGAGATGCTGACCAAGTG
LOC_Os09g37690
OsAffx.30175.1.S1_at--177--611Chr09:21724103..21724127 (25 bp)
ATGCTGACCAAGTGGGTGGCGCGGC
LOC_Os09g37690
OsAffx.30175.1.S1_at--504--9451Chr09:21723955..21723979 (25 bp)
TCGGCATCTGGTACAGCGACGAGCT
LOC_Os09g37690
Target Sequence 
CGTCATCAAGAGGTCGGCGAAGTCCTTCACCTTCCGCGACGACGGCCTGGTGCTGGACGACGACGGCGGCGGCGGCGGCG
AGCGCGTCGTCCAGGCCGACCTGGTGATCCTCGCCACGGGGTTCCGCGGCGACGAGAAGCTGAGGCGCATGTTCGCGTCG
CGCCGGGTGAGGGACATCGTCGCCGGCTCGCCGGAGACCGCCGCGCCGCTGTACAGGGAGTGCGTGCACCCGCGCGTGCC
GCAGATGGCGGTGATCGGGTACTCGGAGAGCGCGACGAACATCCAGACGTGCGAGATGCTGACCAAGTGGGTGGCGCGGC
TGCTGGACGGCGCGTTCCGGCTGCCGCCGGTGCGGCGGATGGAGGCGAGCGTGGCGGAGTGGGGGAGGTACATGAGGCGG
AGCGCCGGCGAGGAGCACTTCCGGCGGTCGTGCCTCGGCGGCGTCGGCATCTGGTACAGCGACGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis