Browse Element(s) Details


OsAffx.30179.1.S1_at

Description tigr:9637.m03223
TID=OsAffx.30179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3787011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30179.1.S1_at--792--6491Chr09:21834409..21834433 (25 bp)
GATAGATTGGATCGCTTCTTACGGG
LOC_Os09g37870
OsAffx.30179.1.S1_at--1123--1631Chr09:21834484..21834508 (25 bp)
AGCGTACCCGCTGATATGCAGCTTA
LOC_Os09g37870
OsAffx.30179.1.S1_at--878--3251Chr09:21834611..21834635 (25 bp)
TAAAAAGGTCCCTCGTCACTGTAGG
LOC_Os09g37870
OsAffx.30179.1.S1_at--671--9691Chr09:21834626..21834650 (25 bp)
TCACTGTAGGTGTCATGCTCTCCAG
LOC_Os09g37870
OsAffx.30179.1.S1_at--611--4351Chr09:21834647..21834671 (25 bp)
CCAGCTTCTTTGTCCCTGGGAATAA
LOC_Os09g37870
OsAffx.30179.1.S1_at--479--9591Chr09:21834677..21834701 (25 bp)
TCACAAAGTTGCAAAGTTCCCGGGT
LOC_Os09g37870
OsAffx.30179.1.S1_at--243--1171Chr09:21834919..21834943 (25 bp)
AGTACTCCGTTTCCTATGACTATGG
LOC_Os09g37870
OsAffx.30179.1.S1_at--795--7411Chr09:21834972..21834996 (25 bp)
GTGTTGGGCGACTTCGGTCATCATC
LOC_Os09g37870
OsAffx.30179.1.S1_at--369--9611Chr09:21834989..21835013 (25 bp)
TCATCATCTTCTTTGCGGGCATGCT
LOC_Os09g37870
OsAffx.30179.1.S1_at--203--3991Chr09:21835004..21835028 (25 bp)
CGGGCATGCTCAGCTGCAAGTGCAA
LOC_Os09g37870
OsAffx.30179.1.S1_at--453--1591Chr09:21835036..21835060 (25 bp)
AGCTCGGAGAAATCGCTTCTGGCTA
LOC_Os09g37870
Target Sequence 
GATAGATTGGATCGCTTCTTACGGGGCTCACCCAAGTACGTCAAGCAGCACCTCATCCGGGAACACACGGAATACAGCGT
ACCCGCTGATATGCAGCTTAGGTTCATAGATGATATCGAGAGGAGATTCCGGAAGGTCGATTACCAAGAGGTGATCAAGG
CTCGCATTTGGGAGGGTTACGAGAGGTCCAAAATGCCTCTGATAAAAAGGTCCCTCGTCACTGTAGGTGTCATGCTCTCC
AGCTTCTTTGTCCCTGGGAATAATAAAGTCACAAAGTTGCAAAGTTCCCGGGTCGATGGAAGCAAGGAACAGGGTCGAGG
AACGTGGTTAAGTCTTTTTTGGGGCGAAGGGAGTACTCCGTTTCCTATGACTATGGATGGGATGTCCAAATTGTTGAAGA
TGGTGTGTTGGGCGACTTCGGTCATCATCTTCTTTGCGGGCATGCTCAGCTGCAAGTGCAACCATGGAAGCTCGGAGAAA
TCGCTTCTGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis