Browse Element(s) Details


OsAffx.30180.2.S1_at

Description tigr:9637.m03224
TID=OsAffx.30180.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus receptor-like kinase RLK14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3788011/11D-mannose binding lectin family protein
LOC_Os09g378401/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37840OsAffx.30180.4.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.18038.1.S1_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.4.S1_x_at11/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.2.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840OsAffx.30180.3.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37840Os.10719.1.S1_at1/119+21797604..21819928D-mannose binding lectin family protein
LOC_Os09g37850NANA9+21822765..21824095retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g37860Os.16852.1.S1_at11/119+21827697..21833011Proliferating-cell nucleolar antigen p120, putative, expressed
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30180.2.S1_at--878--4471Chr09:21843719..21843743 (25 bp)
GCCGGTAATATTTTGCTAGATGCAG
LOC_Os09g37880
OsAffx.30180.2.S1_at--807--3391Chr09:21843800..21843824 (25 bp)
CAGAATGCAAATACCCAACGTGTTG
LOC_Os09g37880
OsAffx.30180.2.S1_at--482--9872Chr09:21843980..21844004 (25 bp)
TACAGCTTTGGTGTGTTATTGTTGG
LOC_Os09g37880
OsAffx.30180.2.S1_at--167--8051Chr09:21844023..21844047 (25 bp)
GGAGAAATTCCGTTAGCAACATCAT
LOC_Os09g37880
OsAffx.30180.2.S1_at--719--6771Chr09:21844034..21844058 (25 bp)
GTTAGCAACATCATGGGCTTTCCAA
LOC_Os09g37880
OsAffx.30180.2.S1_at--203--7591Chr09:21844048..21844072 (25 bp)
GGGCTTTCCAAACCTAATAGTCTAT
LOC_Os09g37880
OsAffx.30180.2.S1_at--904--4971Chr09:21844538..21844562 (25 bp)
GCATCCATTTAGCTTTATTGTGTGT
LOC_Os09g37880
OsAffx.30180.2.S1_at--855--5651Chr09:21844579..21844603 (25 bp)
GACAGGCCACTTATGCCATTTGTTG
LOC_Os09g37880
OsAffx.30180.2.S1_at--1060--4431Chr09:21844593..21844617 (25 bp)
GCCATTTGTTGTGTTCATCCTAGAG
LOC_Os09g37880
OsAffx.30180.2.S1_at--218--8191Chr09:21844621..21844645 (25 bp)
GGAAGTAGTACTGCACTGCCAACCC
LOC_Os09g37880
OsAffx.30180.2.S1_at--294--4531Chr09:21844652..21844676 (25 bp)
GCCCTACCTACTTTGCGCAGAGGAG
LOC_Os09g37880
Target Sequence 
GCCGGTAATATTTTGCTAGATGCAGAGATGAAACCTAAGATAGCAGATTTTGGCATGGCAAGGATCTTTGGTGATAATCA
ACAGAATGCAAATACCCAACGTGTTGTTGGAACATATGGTTATATGGCTCCTGAGTATGCAATGGAAGGTATCTTTTCTA
CTAAATCAGATGTCTACAGCTTTGGTGTGTTATTGTTGGAAGTTATAACCGGTATGAGGAGAAATTCCGTTAGCAACATC
ATGGGCTTTCCAAACCTAATAGTCTATGCATGGAATATGTGGAAGGAAGGGAAGACCGAGGATTTGGCAGACTCATCAAT
TATGGATAGTTGCTTACAAGATGAAGTTTTACTTTGCATCCATTTAGCTTTATTGTGTGTTCAAGAAAACCCAGATGACA
GGCCACTTATGCCATTTGTTGTGTTCATCCTAGAGAATGGAAGTAGTACTGCACTGCCAACCCCAAGTCGCCCTACCTAC
TTTGCGCAGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30180.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis