Browse Element(s) Details


OsAffx.30188.1.S1_s_at

Description tigr:9637.m03263
TID=OsAffx.30188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3823911/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38180OsAffx.22848.4.S1_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38180OsAffx.22848.4.S1_x_at2/119+21990846..21996285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g38200NANA9+22000708..22005426retrotransposon protein, putative, unclassified
LOC_Os09g38210Os.13580.1.A1_at4/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38210Os.49579.1.S1_at1/119+22007030..22009086Auxin Efflux Carrier family protein
LOC_Os09g38239Os.15407.1.S1_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38239OsAffx.30188.1.S1_s_at11/119+22013268..22014768Sulfotransferase domain containing protein, expressed
LOC_Os09g38268OsAffx.26522.2.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38268Os.54279.1.S1_at11/119+22018137..22032258RNA polymerase Rpb1, domain 2 family protein, expressed
LOC_Os09g38300OsAffx.6517.1.S1_at11/119+22034063..22035817Kelch motif family protein
LOC_Os09g38310Os.53582.1.S1_at11/119+22036478..22040192pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30188.1.S1_s_at--904--9511Chr09:22013299..22013323 (25 bp)
TCTCAGTCAAAGCACGCCACCGTAT
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--16--9651Chr09:22013301..22013325 (25 bp)
TCAGTCAAAGCACGCCACCGTATTA
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--580--7091Chr09:22013304..22013328 (25 bp)
GTCAAAGCACGCCACCGTATTACGG
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--1033--3271Chr09:22013306..22013330 (25 bp)
CAAAGCACGCCACCGTATTACGGGA
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--116--2731Chr09:22013308..22013332 (25 bp)
AAGCACGCCACCGTATTACGGGAGA
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--255--4771Chr09:22013310..22013334 (25 bp)
GCACGCCACCGTATTACGGGAGATG
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--243--1771Chr09:22013317..22013341 (25 bp)
ACCGTATTACGGGAGATGGTCGCCG
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--43--8411Chr09:22013391..22013415 (25 bp)
GGCGCCATGCGGGTCGACAACAACG
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--110--7711Chr09:22013401..22013425 (25 bp)
GGGTCGACAACAACGCCGCGCGATG
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--48--4231Chr09:22013426..22013450 (25 bp)
CCGACGTAGACGACAAGATGACCAT
LOC_Os09g38239
OsAffx.30188.1.S1_s_at--372--5611Chr09:22013437..22013461 (25 bp)
GACAAGATGACCATCGTCGGCCACC
LOC_Os09g38239
Target Sequence 
TCTCAGTCAAAGCACGCCACCGTATTACGGGAGATGGTCGCCGCCGCCGAGGCCAAAGCCGCCATCGGGGTGGCAACGCC
GACGCCGACGGCGGCGCCATGCGGGTCGACAACAACGCCGCGCGATGCCGACGTAGACGACAAGATGACCATCGTCGGCC
ACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30188.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis