Browse Element(s) Details


OsAffx.30207.1.S1_at

Description tigr:9637.m03368
TID=OsAffx.30207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3937011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30207.1.S1_at--642--892Chr09:22639343..22639367 (25 bp)
AGGCGCGGCGGGTGAAGTGGAACTT
LOC_Os09g39370
OsAffx.30207.1.S1_at--1013--6731Chr09:22639216..22639240 (25 bp)
GTTCATGGTGAAGGCGCGCGACGGA
LOC_Os09g39370
OsAffx.30207.1.S1_at--39--9891Chr09:22638241..22638265 (25 bp)
TACATCCCTGAACCTCAGGACATTA
LOC_Os09g39370
OsAffx.30207.1.S1_at--270--5451Chr09:22638233..22638257 (25 bp)
TGAACCTCAGGACATTAACGAACCC
LOC_Os09g39370
OsAffx.30207.1.S1_at--620--951Chr09:22638225..22638249 (25 bp)
AGGACATTAACGAACCCCTCATCAG
LOC_Os09g39370
OsAffx.30207.1.S1_at--523--9791Chr09:22638218..22638242 (25 bp)
TAACGAACCCCTCATCAGCAACAAA
LOC_Os09g39370
OsAffx.30207.1.S1_at--381--3551Chr09:22638206..22638230 (25 bp)
CATCAGCAACAAACAACGCTACATC
LOC_Os09g39370
OsAffx.30207.1.S1_at--261--4851Chr09:22638189..22638213 (25 bp)
GCTACATCGTCACCGCGCTTTCTGT
LOC_Os09g39370
OsAffx.30207.1.S1_at--298--1791Chr09:22638178..22638202 (25 bp)
ACCGCGCTTTCTGTCAACAGGTTTA
LOC_Os09g39370
OsAffx.30207.1.S1_at--158--10611Chr09:22638170..22638194 (25 bp)
TTCTGTCAACAGGTTTAGGCCACCA
LOC_Os09g39370
OsAffx.30207.1.S1_at--704--8711Chr09:22638167..22638191 (25 bp)
TGTCAACAGGTTTAGGCCACCAGGG
LOC_Os09g39370
Target Sequence 
AGGCGCGGCGGGTGAAGTGGAACTTCCGGGGGAACAGGACGGCGGTGCTCGGGGACGGCGCGGTGGTGGAGGTGATGTGG
GACGTGCACGACTGGTGGTTCGCCGGCGGCGGCGGCGGCGGGGCGCAGTTCATGGTGAAGGCGCGCGACGGAGACGGAGA
CGGAGACGGCGGGAGGGTGTGGATGGACGAGGCGGCCTCCATTGCTGATGATATCCCGCCGTCTCTCACGCGCATCACCC
ATCCCGGCCCTATGATCACCTTCACTAACCACGAGGTCTCCATCCTGCACTACATCCCTGAACCTCAGGACATTAACGAA
CCCCTCATCAGCAACAAACAACGCTACATCGTCACCGCGCTTTCTGTCAACAGGTTTAGGCCACCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis