Browse Element(s) Details


OsAffx.30251.1.S1_at

Description tigr:9638.m00230
TID=OsAffx.30251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0323011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03160OsAffx.8548.1.S1_at11/1110+1321050..1322111transposon protein, putative, unclassified
LOC_Os10g03170OsAffx.15648.1.S1_at1/1110+1322987..1325433hypothetical protein
LOC_Os10g03180NANA10+1325907..1326950hypothetical protein
LOC_Os10g03190OsAffx.30891.1.S1_x_at2/1110+1331909..1333198hypothetical protein
LOC_Os10g03190OsAffx.7527.1.S1_x_at1/1110+1331909..1333198hypothetical protein
LOC_Os10g03200NANA10+1336788..1338100hypothetical protein
LOC_Os10g03210OsAffx.30774.1.S1_s_at11/1110+1339586..1340655hypothetical protein
LOC_Os10g03220OsAffx.6563.1.S1_at11/1110+1341090..1343329transposase, putative, expressed
LOC_Os10g03230OsAffx.30251.1.S1_at11/1110+1343664..1344464hypothetical protein
LOC_Os10g03240Os.45173.1.S1_x_at6/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240Os.45173.5.S1_x_at4/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240OsAffx.20877.1.S1_at1/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03250Os.7393.1.S1_at1/1110+1356435..1360856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03260OsAffx.30252.1.S1_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30252.1.S1_x_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30257.1.S1_x_at1/1110+1365838..1366663hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_x_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270OsAffx.30253.1.S1_at11/1110+1368468..1369723hypothetical protein
LOC_Os10g03270Os.55138.1.S1_x_at3/1110+1368468..1369723hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30251.1.S1_at--243--5511Chr10:1343979..1344003 (25 bp)
GAACACAGTGATCCTATACTTCCAT
LOC_Os10g03230
OsAffx.30251.1.S1_at--34--10191Chr10:1343993..1344017 (25 bp)
TATACTTCCATATCTCCCTGATGAA
LOC_Os10g03230
OsAffx.30251.1.S1_at--857--6311Chr10:1344018..1344042 (25 bp)
GATGAACCATATGTCTGGCTGGCTG
LOC_Os10g03230
OsAffx.30251.1.S1_at--493--3911Chr10:1344032..1344056 (25 bp)
CTGGCTGGCTGAGGCTGACATGCAT
LOC_Os10g03230
OsAffx.30251.1.S1_at--549--6071Chr10:1344100..1344124 (25 bp)
GAGTTATGCTGACAGCGCCAAGCAT
LOC_Os10g03230
OsAffx.30251.1.S1_at--790--2871Chr10:1344136..1344160 (25 bp)
AAGGGCCAAGTCATTACAGCGGAAA
LOC_Os10g03230
OsAffx.30251.1.S1_at--170--2911Chr10:1344160..1344184 (25 bp)
AAGGATCGCCATGCGATGCTTCATG
LOC_Os10g03230
OsAffx.30251.1.S1_at--928--3491Chr10:1344205..1344229 (25 bp)
CATGGCACGATGGTTTGTCATTAGA
LOC_Os10g03230
OsAffx.30251.1.S1_at--469--3031Chr10:1344321..1344345 (25 bp)
AATCCATCACGTGTTGCGGGTTACA
LOC_Os10g03230
OsAffx.30251.1.S1_at--1082--5371Chr10:1344357..1344381 (25 bp)
GAAGAACCAAGGCACTCTAGCAAAA
LOC_Os10g03230
OsAffx.30251.1.S1_at--580--5951Chr10:1344383..1344407 (25 bp)
GAGCAAACCTTCATCAGTTCCATGT
LOC_Os10g03230
Target Sequence 
GAACACAGTGATCCTATACTTCCATATCTCCCTGATGAAGATGAACCATATGTCTGGCTGGCTGAGGCTGACATGCATGA
GAATGATAATGCTCTAATAGATGTGCATAAAGATGAAATTAGAGTTATGCTGACAGCGCCAAGCATCAATGGTGAAGAAG
GGCCAAGTCATTACAGCGGAAAAGGATCGCCATGCGATGCTTCATGCCCAAAGCAAGCAAAGGAACCATGGCACGATGGT
TTGTCATTAGAAGAAGAGCATGAGGGAAGATGCGAAGATGAACAAACACATTGTAGCAAAAGGAAGAAACCATGCAATGT
TTCATGTTCAAAGCTATCAAAGAATCCATCACGTGTTGCGGGTTACAGATCAAGAAAAGAAGAACCAAGGCACTCTAGCA
AAAAGAGCAAACCTTCATCAGTTCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis