Browse Element(s) Details


OsAffx.30285.1.S1_at

Description tigr:9638.m00410
TID=OsAffx.30285.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0499011/11hypothetical protein
LOC_Os11g203202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04919OsAffx.403.1.S1_at11/1110+2389554..2389722NA
LOC_Os10g04930OsAffx.20755.1.S1_at1/1110+2392842..2393390hypothetical protein
LOC_Os10g04940OsAffx.20755.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04940Os.46727.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04950OsAffx.27750.1.S1_x_at1/1110+2397028..2397471hypothetical protein
LOC_Os10g04960Os.46856.1.S1_at1/1110+2400239..2400638hypothetical protein
LOC_Os10g04980Os.46853.2.S1_x_at11/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.46853.1.S1_at9/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980OsAffx.27750.1.S1_x_at2/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.36607.2.S1_x_at1/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04990OsAffx.30285.1.S1_at11/1110+2414285..2416799hypothetical protein
LOC_Os10g05000Os.46564.1.S1_at1/1110+2420647..2423219F-box domain containing protein, expressed
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30285.1.S1_at--110--5771Chr10:2414332..2414356 (25 bp)
GACGTGCTCGCTTCTGCTGATATCC
LOC_Os10g04990
OsAffx.30285.1.S1_at--773--10591Chr10:2414343..2414367 (25 bp)
TTCTGCTGATATCCACATCGTCCCG
LOC_Os10g04990
OsAffx.30285.1.S1_at--222--4691Chr10:2414396..2414420 (25 bp)
GCTGTGGGCCCGGTTCCTGCCGTTT
LOC_Os10g04990
OsAffx.30285.1.S1_at--283--4171Chr10:2414436..2414460 (25 bp)
CGCCTCCGGCGCTTGTGCTGAAGCT
LOC_Os10g04990
OsAffx.30285.1.S1_at--245--6911Chr10:2414474..2414498 (25 bp)
GTATCTCTAAATGGGCTGTCAGGGT
LOC_Os10g04990
OsAffx.30285.1.S1_at--867--8111Chr10:2414513..2414691 (25 bp)
GGACGGTGCGCTGGCAGACTCCTTT
LOC_Os10g04990
OsAffx.30285.1.S1_at--932--4711Chr10:2414522..2414700 (25 bp)
GCTGGCAGACTCCTTTGCGCGTCCT
LOC_Os10g04990
OsAffx.30285.1.S1_at--353--10631Chr10:2414703..2414727 (25 bp)
TTCGCCCAGGCGCTGCTACGGTCGT
LOC_Os10g04990
OsAffx.30285.1.S1_at--652--3932Chr10:2414782..2414806 (25 bp)
CGGCGTCCCTGTTGAGGGACCATGC
LOC_Os10g04990
OsAffx.30285.1.S1_at--1020--32Chr10:2416245..2416269 (25 bp)
ATTGTCCTTATCCAAGCACATGCTG
LOC_Os10g04990
OsAffx.30285.1.S1_at--37--2572Chr10:2416720..2416744 (25 bp)
AACTGACCATGGACTTTCAATGGGT
LOC_Os10g04990
Target Sequence 
GACGTGCTCGCTTCTGCTGATATCCACATCGTCCCGCTCCCTCCGCGCGCGCGAGGCTGATGCGGCTGTGGGCCCGGTTC
CTGCCGTTTCCCGCGCTAGGGGAGCGCCTCCGGCGCTTGTGCTGAAGCTGCTGCGGGCTTGGGTATCTCTAAATGGGCTG
TCAGGGTGGGGCCCAACCAAGGGACGGTGCGCTGGCAGACTCCTTTGCGCGTCCTCCTTCGCCCAGGCGCTGCTACGGTC
GTTCGATGCCGTGGTGAACCACCTCCAGGCTGCGCTCGACGCCACGGACGCCGCGGCGGCGTCCCTGTTGAGGGACCATG
CGGCGCTCGACGACGGCAACACACGGCTCNNGNCNNNNCNAGNNNNNANCNNNGNNNNNANCNNNATTGTCCTTATCCAA
GCACATGCTGAAAAATCTAAAGTCAAATGCCAAGAAAGCCNACCATCAAAAGCTTTCAATGGGTNCAAGCNAACCATTGA
TTTNGAGGNAACTGACCATGGACTTTCAATGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis