Browse Element(s) Details


OsAffx.30286.1.S1_at

Description tigr:9638.m00414
TID=OsAffx.30286.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC112513 Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0503011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05000Os.46564.1.S1_at1/1110+2420647..2423219F-box domain containing protein, expressed
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30286.1.S1_at--920--6011Chr10:2442228..2442252 (25 bp)
GAGAGTAGTCGCTACCTCACTATGG
LOC_Os10g05030
OsAffx.30286.1.S1_at--186--10071Chr10:2442233..2442257 (25 bp)
TAGTCGCTACCTCACTATGGAGCAC
LOC_Os10g05030
OsAffx.30286.1.S1_at--812--4151Chr10:2442289..2442313 (25 bp)
CGCCCCCGTTAGAATCATCTCATAA
LOC_Os10g05030
OsAffx.30286.1.S1_at--655--1351Chr10:2442314..2442338 (25 bp)
AGAGATCCAAACAGCAACCACGGTT
LOC_Os10g05030
OsAffx.30286.1.S1_at--73--6371Chr10:2442317..2442341 (25 bp)
GATCCAAACAGCAACCACGGTTAAA
LOC_Os10g05030
OsAffx.30286.1.S1_at--779--951Chr10:2442363..2442387 (25 bp)
AGGACTCTGTGTCGCGCCTCCGTGA
LOC_Os10g05030
OsAffx.30286.1.S1_at--664--8911Chr10:2442511..2442535 (25 bp)
TGAGCTCGCCAGTTGGCCTGTGCAT
LOC_Os10g05030
OsAffx.30286.1.S1_at--855--7971Chr10:2442603..2442627 (25 bp)
GGATGAAGAGCCACCATTTTCTCAT
LOC_Os10g05030
OsAffx.30286.1.S1_at--40--3591Chr10:2442617..2442641 (25 bp)
CATTTTCTCATATTGCCACCAACGA
LOC_Os10g05030
OsAffx.30286.1.S1_at--405--231Chr10:2442626..2442650 (25 bp)
ATATTGCCACCAACGATGTGGAGAT
LOC_Os10g05030
OsAffx.30286.1.S1_at--776--7511Chr10:2442671..2442695 (25 bp)
GTGGAGGTGGATGCTGTGCTCGCAA
LOC_Os10g05030
Target Sequence 
GAGAGTAGTCGCTACCTCACTATGGAGCACCGCCGCCGAGCTCCCCCAAGGATCGCCGACTCGCCCCCGTTAGAATCATC
TCATAAAGAGATCCAAACAGCAACCACGGTTAAAGGGGAGAGGCCAGATGCCGTCAGGACTCTGTGTCGCGCCTCCGTGA
ACACCACTACTTCTCCTGCTCATGCGACCCATCTCCAAGACCAGGGCGGCGAGGTTGGGGAGCATGAGTTCAATGGAGGC
GGTGGAAGAGCTATAGCTAGAGGCGGGGGGAAGAGGCGGAGCTTGAGCTCGCCAGTTGGCCTGTGCATGGAGGAGGATGA
AGAGCCACCATTTTCTCATATTGCCACCAACGATGTGGAGATGGAAGAGCTGCTTGGTGGAGGTGGAGGTGGATGCTGTG
CTCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis