Browse Element(s) Details


OsAffx.30290.1.S1_at

Description tigr:9638.m00428
TID=OsAffx.30290.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC112513 Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0517011/11serine threonine kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30290.1.S1_at--59--10351Chr10:2508161..2508185 (25 bp)
TTTATCCAAGGAGCTGACAAGGCAA
LOC_Os10g05170
OsAffx.30290.1.S1_at--495--1431Chr10:2508242..2508266 (25 bp)
AGAACTACCAGCAACTACAGCACTA
LOC_Os10g05170
OsAffx.30290.1.S1_at--596--5091Chr10:2508261..2508285 (25 bp)
GCACTAGCCTTGGAAATGGTTCATT
LOC_Os10g05170
OsAffx.30290.1.S1_at--377--6471Chr10:2508314..2508338 (25 bp)
GATAACACTGCAGTTGCGGTGAAAA
LOC_Os10g05170
OsAffx.30290.1.S1_at--14--1271Chr10:2508338..2508362 (25 bp)
AGATATTCCCGCATAGATTCAGAAG
LOC_Os10g05170
OsAffx.30290.1.S1_at--575--3132Chr10:2508454..2508478 (25 bp)
AATTATGGTCTTTGAGTATGTCTCT
LOC_Os10g05170
OsAffx.30290.1.S1_at--993--6071Chr10:2508467..2508491 (25 bp)
GAGTATGTCTCTAATGGAACCCTTT
LOC_Os10g05170
OsAffx.30290.1.S1_at--1000--5431Chr10:2508483..2508507 (25 bp)
GAACCCTTTGCGAGAACCCACATGG
LOC_Os10g05170
OsAffx.30290.1.S1_at--680--1811Chr10:2508498..2508522 (25 bp)
ACCCACATGGCAGTAATGTTCCCGT
LOC_Os10g05170
OsAffx.30290.1.S1_at--788--7051Chr10:2508510..2508534 (25 bp)
GTAATGTTCCCGTCTATTTGGACAA
LOC_Os10g05170
OsAffx.30290.1.S1_at--1034--6071Chr10:2508541..2508565 (25 bp)
GAGTATAGCCATACAATGTGCGGAA
LOC_Os10g05170
Target Sequence 
TTTATCCAAGGAGCTGACAAGGCAAAATGGATAGCTAAGAATAATCATAACATAAAGTATTTTACAGAAGATGAGATCAA
AAGAACTACCAGCAACTACAGCACTAGCCTTGGAAATGGTTCATTCGGAAAAGTTTACAACGGAATCATTGATGATAACA
CTGCAGTTGCGGTGAAAAGATATTCCCGCATAGATTCAGAAGAAGAGTTTGCCAAAGAAGTAATTGTCCACAGCCAAGTC
AACCATAAGAATGTAGTTAGGCTAATTGGATGTTGTACAGAGAAAAATGCTCCAATTATGGTCTTTGAGTATGTCTCTAA
TGGAACCCTTTGCGAGAACCCACATGGCAGTAATGTTCCCGTCTATTTGGACAAAAGGTTGAGTATAGCCATACAATGTG
CGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis