Browse Element(s) Details


OsAffx.303.1.S1_at

Description gb:NM_195512.1
DB_XREF= gi:37532383
TID=OsAffx.303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein from transposon TNT (OSJNBa0082N11.10), mRNA.
PROD=putative polyprotein from transposon TNT
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1488011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g146801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14814Os.8788.1.S1_at6/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14814Os.20353.1.S2_at4/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14830NANA10+7526009..7526596retrotransposon protein, putative, unclassified
LOC_Os10g14840NANA10+7526991..7528088hypothetical protein
LOC_Os10g14850OsAffx.15708.1.S1_at1/1110+7529548..7530778hypothetical protein
LOC_Os10g14860OsAffx.21779.1.S1_at11/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14860OsAffx.21779.3.S1_at2/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14870Os.5438.1.S1_at11/1110+7534704..7536767heavy metal-associated domain containing protein, expressed
LOC_Os10g14880OsAffx.303.1.S1_at11/1110+7538556..7538897retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.303.1.S1_at--1037--8411Chr10:7538832..7538856 (25 bp)
GGCCGAGTGTCTTCATGAACTCCTA
LOC_Os10g14880
OsAffx.303.1.S1_at--874--4151Chr10:7538830..7538854 (25 bp)
CCGAGTGTCTTCATGAACTCCTAAT
LOC_Os10g14880
OsAffx.303.1.S1_at--56--6131Chr10:7538828..7538852 (25 bp)
GAGTGTCTTCATGAACTCCTAATGG
LOC_Os10g14880
OsAffx.303.1.S1_at--440--7131Chr10:7538706..7538730 (25 bp)
GTCATCCAGGCATGTGAAAAGAAAT
LOC_Os10g14880
OsAffx.303.1.S1_at--198--4351Chr10:7538701..7538725 (25 bp)
CCAGGCATGTGAAAAGAAATCTCAA
LOC_Os10g14880
OsAffx.303.1.S1_at--179--5591Chr10:7538686..7538710 (25 bp)
GAAATCTCAAATCTATTAGAGAGCA
LOC_Os10g14880
OsAffx.303.1.S1_at--558--6011Chr10:7538668..7538692 (25 bp)
GAGAGCAGAAAAACTCTGGAGTTAT
LOC_Os10g14880
OsAffx.303.1.S1_at--510--10052Chr05:8433674..8434190 (25 bp)
TATGTCCAGATAGCTAAAATTCTAG
NONE
OsAffx.303.1.S1_at--292--3151Chr10:7538616..7538640 (25 bp)
AATTCTAGCAGATCAGTTTACTAAG
LOC_Os10g14880
OsAffx.303.1.S1_at--795--1512Chr12:8403020..8403039 (20 bp)
AGCAGATCAGTTTACTAAGGGACTA
LOC_Os12g14680
OsAffx.303.1.S1_at--294--6831Chr10:7538601..7538625 (25 bp)
GTTTACTAAGGGACTATCACGCAAT
LOC_Os10g14880
Target Sequence 
GGCCGAGTGTCTTCATGAACTCCTAATGGATTTGCCAGTGGTTGAAAAACCAGTACCAGCTATCCTGATGAACTGTGATA
ATCAAACAGTGATTATTAAGGTGAACAGTTTGAAGGGGAACATGAAGTCATCCAGGCATGTGAAAAGAAATCTCAAATCT
ATTAGAGAGCAGAAAAACTCTGGAGTTATAGCTTTGGACTATGTCCAGATAGCTAAAATTCTAGCAGATCAGTTTACTAA
GGGACTATCACGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis