Browse Element(s) Details


OsAffx.30374.2.S1_at

Description tigr:9638.m00906
TID=OsAffx.30374.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1032011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10260OsAffx.20666.1.S1_at11/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20666.1.S1_x_at11/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20536.1.S1_x_at2/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.30370.1.S1_x_at1/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20536.2.S1_x_at1/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.15091.1.S1_at1/1110+5410892..5411779expressed protein
LOC_Os10g10270OsAffx.30370.1.S1_at11/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.30370.1.S1_x_at11/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.20666.1.S1_x_at2/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.20536.2.S1_x_at2/1110+5412162..5412947hypothetical protein
LOC_Os10g10280Os.46319.1.S1_s_at11/1110+5413861..5417242hypothetical protein
LOC_Os10g10280OsAffx.30371.1.S1_at6/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.26733.2.S1_x_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.52575.1.S1_x_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.17829.1.S1_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10290NANA10+5420716..5422699hypothetical protein
LOC_Os10g10300NANA10+5423273..5428084retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10310NANA10+5430254..5430610hypothetical protein
LOC_Os10g10320OsAffx.30374.2.S1_at11/1110+5436317..5437198hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_s_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.3.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10334OsAffx.30374.1.S1_at11/1110+5443046..5447176hypothetical protein
LOC_Os10g10350OsAffx.8417.1.S1_at11/1110+5449497..5455340retrotransposon protein, putative, unclassified
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30374.2.S1_at--767--8651Chr10:5436878..5436902 (25 bp)
TGTGGACCCGCGCTTTTTCACATTC
LOC_Os10g10320
OsAffx.30374.2.S1_at--671--3671Chr10:5436866..5436890 (25 bp)
CTTTTTCACATTCCACCAGGACCTG
LOC_Os10g10320
OsAffx.30374.2.S1_at--50--9151Chr10:5436837..5436861 (25 bp)
TGCGTGGTGTCGCAGACATCCTAGA
LOC_Os10g10320
OsAffx.30374.2.S1_at--34--1411Chr10:5436824..5436848 (25 bp)
AGACATCCTAGACGGTGTCGGCTCG
LOC_Os10g10320
OsAffx.30374.2.S1_at--34--8891Chr10:5436726..5436750 (25 bp)
TGATGGCGGCCTATAGCTGCCTCTC
LOC_Os10g10320
OsAffx.30374.2.S1_at--361--4391Chr10:5436647..5436671 (25 bp)
GCCAATCGACCGTGAAGAGATCTTC
LOC_Os10g10320
OsAffx.30374.2.S1_at--478--5371Chr10:5436464..5436488 (25 bp)
GAAGACAGCGGGAGGCTCACAGCCA
LOC_Os10g10320
OsAffx.30374.2.S1_at--1133--1611Chr10:5436458..5436482 (25 bp)
AGCGGGAGGCTCACAGCCAATGTAC
LOC_Os10g10320
OsAffx.30374.2.S1_at--907--8591Chr10:5436396..5436420 (25 bp)
TGGTGCTCAACGGAGAGCGTCTCGT
LOC_Os10g10320
OsAffx.30374.2.S1_at--1139--1631Chr10:5436381..5436405 (25 bp)
AGCGTCTCGTCAAGATCTCCATCCG
LOC_Os10g10320
OsAffx.30374.2.S1_at--699--4411Chr10:5436351..5436375 (25 bp)
GCCAGATCTGGCTCCGCAAGTATGT
LOC_Os10g10320
Target Sequence 
TGTGGACCCGCGCTTTTTCACATTCCACCAGGACCTGGTGGTGCGTGGTGTCGCAGACATCCTAGACGGTGTCGGCTCGC
TCATCTTCAATAACCACCTCAACAAGATGCTCCGCCGCTACCAGACCGGCCTAGTCGGCAACCCGCCGGAGCTGATGGCG
GCCTATAGCTGCCTCTCCGTCGCCGTGCCGGAGGACTGCCGCTCCATGTTCATCACCTTCTCCAGGGGAGCGCCAATCGA
CCGTGAAGAGATCTTCGACTACTTCAGGCAGAAGTGGGGCGACTGCGTGGTGCGTGTCCTGATGGAGAAGACAGCGGGAG
GCTCACAGCCAATGTACGGGCGAATCATCTTCCGGAGCGAGGCATTTGTGCAGCTGGTGCTCAACGGAGAGCGTCTCGTC
AAGATCTCCATCCGCCATCGCCAGATCTGGCTCCGCAAGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30374.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis