Browse Element(s) Details


OsAffx.30385.1.S1_at

Description tigr:9638.m00964
TID=OsAffx.30385.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1088011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10840OsAffx.21897.5.S1_x_at6/1110+5763460..5766401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10849OsAffx.20657.1.S1_at5/1110+5770148..5770375hypothetical protein
LOC_Os10g10860OsAffx.18211.1.S1_x_at11/1110+5777639..5779653hypothetical protein
LOC_Os10g10870Os.26791.1.S1_a_at11/1110+5784178..5785245protein kinase family protein, putative, expressed
LOC_Os10g10880OsAffx.30385.1.S1_at11/1110+5790565..5794073hypothetical protein
LOC_Os10g10890OsAffx.8405.1.S1_at10/1110+5795045..5796811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10904NANA10+5804858..5805160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.2.S1_x_at10/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.1.S1_x_at9/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.3.S1_x_at6/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.5.S1_x_at1/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10929NANA10+5813234..5813536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10938NANA10+5816540..5816764retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30385.1.S1_at--66--2571Chr10:5793507..5793531 (25 bp)
AACTGGTTATGTGGGTGCTCTTTAT
LOC_Os10g10880
OsAffx.30385.1.S1_at--929--9011Chr10:5793569..5793593 (25 bp)
TGCAATGTTTTGACCTCATGCCGAT
LOC_Os10g10880
OsAffx.30385.1.S1_at--931--9911Chr10:5793600..5793624 (25 bp)
TACTGCTAGATCCTTTCGAACGATG
LOC_Os10g10880
OsAffx.30385.1.S1_at--20--8911Chr10:5793633..5793657 (25 bp)
TGAGCTAGAGCTTTTCGAACGTGTT
LOC_Os10g10880
OsAffx.30385.1.S1_at--1033--10571Chr10:5793646..5793670 (25 bp)
TTCGAACGTGTTGTCTGTCCAAATA
LOC_Os10g10880
OsAffx.30385.1.S1_at--1119--2251Chr10:5793666..5793690 (25 bp)
AAATAATTTTGCTCGACTTCGTCTC
LOC_Os10g10880
OsAffx.30385.1.S1_at--67--271Chr10:5793862..5793886 (25 bp)
ATAGGATGGCTTGGTCTGGGTCAAC
LOC_Os10g10880
OsAffx.30385.1.S1_at--341--7351Chr10:5793890..5793914 (25 bp)
GTGCAAGTACTTCCATAGAGTGCTT
LOC_Os10g10880
OsAffx.30385.1.S1_at--954--10131Chr10:5793924..5793948 (25 bp)
TATGCCATGGCTGCTGATATCAACA
LOC_Os10g10880
OsAffx.30385.1.S1_at--29--2291Chr10:5793956..5793980 (25 bp)
AAATCCTAATTTTCGCAGAGTGCAT
LOC_Os10g10880
OsAffx.30385.1.S1_at--900--5171Chr10:5793992..5794016 (25 bp)
GCAAGATGCAAATTTCCTTCCTTTT
LOC_Os10g10880
Target Sequence 
AACTGGTTATGTGGGTGCTCTTTATTGGGGTTGGGACCTGGAAGTTATGATCTATCTGGTTATGCAATGTTTTGACCTCA
TGCCGATCGGACCTACTGCTAGATCCTTTCGAACGATGAGTGTGTCTGAGCTAGAGCTTTTCGAACGTGTTGTCTGTCCA
AATAATTTTGCTCGACTTCGTCTCGAGCAACGTTGCATAAATTATAGGATGGCTTGGTCTGGGTCAACCATGTGCAAGTA
CTTCCATAGAGTGCTTAATGCAGTTTATGCCATGGCTGCTGATATCAACAAGCCTGCAAATCCTAATTTTCGCAGAGTGC
ATAACTGTGTTATGCAAGATGCAAATTTCCTTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis