Browse Element(s) Details


OsAffx.30397.1.S1_x_at

Description tigr:9638.m01100
TID=OsAffx.30397.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative replication protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1217410/11hypothetical protein
LOC_Os07g022309/11hypothetical protein
LOC_Os01g706309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12149Os.51348.1.S1_x_at2/1110+6525006..6525746hypothetical protein
LOC_Os10g12160Os.45173.5.S1_x_at4/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12160Os.45173.1.S1_x_at1/1110+6528331..6536158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12174OsAffx.30397.2.S1_at11/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.1.S1_x_at10/1110+6547699..6557457hypothetical protein
LOC_Os10g12174OsAffx.30397.3.S1_x_at5/1110+6547699..6557457hypothetical protein
LOC_Os10g12190OsAffx.30398.1.S1_at11/1110+6559246..6562108Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g12200OsAffx.30399.1.S1_at11/1110+6562608..6563951F-box domain containing protein
LOC_Os10g12220NANA10+6568233..6571191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12226Os.10703.2.S1_x_at1/1110+6571508..6573997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12232NANA10+6574669..6577596retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g12240NANA10+6581229..6584682retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30397.1.S1_x_at--109--7533Chr07:714307..714331 (25 bp)
GTGGACATCTGTTGAGCAATGCCTT
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--993--1473Chr07:714321..714345 (25 bp)
AGCAATGCCTTGATGTGCCTTTCAA
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--760--4413Chr07:714337..714361 (25 bp)
GCCTTTCAATTTCCCTACTGTTGTA
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--970--10792Chr01:41215855..41215879 (25 bp)
TTGTATACTCTCTGACTCCTTTGAA
LOC_Os01g70630
OsAffx.30397.1.S1_x_at--636--8891Chr07:714409..714517 (25 bp)
TGAGTCCTTTGTTGATGTCATCGGG
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--303--253Chr07:714530..714554 (25 bp)
ATATCTACACCTACGATGCTACGTC
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--641--6313Chr07:714544..714568 (25 bp)
GATGCTACGTCCTAAGTCAAGGGAT
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--992--3631Chr10:6549093..6549117 (25 bp)
CTTCCAGCCAATCAAACTACTTCAG
LOC_Os10g12174
OsAffx.30397.1.S1_x_at--478--5473Chr07:715243..715267 (25 bp)
GAACTCTTGGACATGAATCCTCATA
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--990--193Chr07:716342..716366 (25 bp)
ATTTCTGATGACATCACGCTGCCAC
LOC_Os07g02230
OsAffx.30397.1.S1_x_at--781--433Chr07:716374..716398 (25 bp)
ATCTATTCCAAACAGCTCAACCAAG
LOC_Os07g02230
Target Sequence 
GTGGACATCTGTTGAGCAATGCCTTGATGTGCCTTTCAATTTCCCTACTGTTGTATACTCTCTGACTCCTTTGAACGAGG
TGTCAAACTTTGTGGACAAGAATGAGTCCTTTGTTGATGTCATCGGGTTCATTACTGAAATATCTACACCTACGATGCTA
CGTCCTAAGTCAAGGGATGTTAGCAGCTTGAAAAGGACAGTTCAGATATGTGATACAAAGATTGGAGCAAACTTCCAGCC
AATCAAACTACTTCAGGCACCAGCCACAAACATTGCTGATGAAATTGCTGATGACAAAACTGTGAGAGAACTCTTGGACA
TGAATCCTCATAAAAACAGGAAACAGAAGGCTATTATTATTTCTGATGACATCACGCTGCCACTGGCTGCATCTATTCCA
AACAGCTCAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30397.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis