Browse Element(s) Details


OsAffx.30405.1.S1_x_at

Description tigr:9638.m01209
TID=OsAffx.30405.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g190101/11hypothetical protein
LOC_Os04g169241/11hypothetical protein
LOC_Os07g207401/11hypothetical protein
LOC_Os03g358941/11hypothetical protein
LOC_Os03g357691/11hypothetical protein
LOC_Os04g074401/11hypothetical protein
LOC_Os04g239701/11hypothetical protein
LOC_Os09g035601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18970NANA4+10515867..10516205hypothetical protein
LOC_Os04g18980Os.46610.1.S1_x_at5/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.52323.1.S1_at2/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.53292.1.S1_x_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.23633.1.A1_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.53292.1.S1_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18980Os.54151.1.S1_x_at1/114+10516724..10529151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18990NANA4+10530472..10531963hypothetical protein
LOC_Os04g19000Os.45976.1.S1_x_at1/114+10534993..10538383transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g19010OsAffx.30405.1.S1_x_at1/114+10540302..10540589hypothetical protein
LOC_Os04g19020Os.53142.1.S1_at2/114+10542721..10543932hypothetical protein
LOC_Os04g19030NANA4+10545572..10545901hypothetical protein
LOC_Os04g19040NANA4+10548582..10549931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19050NANA4+10553032..10553361hypothetical protein
LOC_Os04g19060OsAffx.15648.1.S1_at1/114+10554467..10555852Zinc knuckle family protein
LOC_Os04g19070NANA4+10561999..10562709hypothetical protein
LOC_Os04g19080NANA4+10564070..10567112hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30405.1.S1_x_at--648--9371Chr10:7222023..7222047 (25 bp)
TCGATGATCATGAAAGACAAGCTTA
NONE
OsAffx.30405.1.S1_x_at--56--8831Chr10:7222019..7222043 (25 bp)
TGATCATGAAAGACAAGCTTACTAC
NONE
OsAffx.30405.1.S1_x_at--781--652Chr04:3938219..3938241 (23 bp)
ATGAAAGACAAGCTTACTACATGCT
LOC_Os04g07440
OsAffx.30405.1.S1_x_at--602--3351Chr10:7221968..7221992 (25 bp)
CACGCGAAAGTACTCACCAGAGCTG
NONE
OsAffx.30405.1.S1_x_at--653--5572Chr10:7221963..7221987 (25 bp)
GAAAGTACTCACCAGAGCTGCTGAA
NONE
OsAffx.30405.1.S1_x_at--1--10091Chr10:7221933..7221957 (25 bp)
TAGGTCTGTATGTTGATTTTCGTGC
NONE
OsAffx.30405.1.S1_x_at--675--38710Chr04:13677364..13677384 (21 bp)
CTGTATGTTGATTTTCGTGCTATTT
LOC_Os04g23970
OsAffx.30405.1.S1_x_at--477--1351NONE
AGAGATTTGCTGTGGATGTCACAGT
NONE
OsAffx.30405.1.S1_x_at--406--6531NONE
GATTTGCTGTGGATGTCACAGTTGT
NONE
OsAffx.30405.1.S1_x_at--382--9691Chr10:7219885..7219909 (25 bp)
TCACAGTTGTTATCGACTACTTCCT
NONE
OsAffx.30405.1.S1_x_at--286--3311Chr10:7219884..7219908 (25 bp)
CACAGTTGTTATCGACTACTTCCTC
NONE
Target Sequence 
TCGATGATCATGAAAGACAAGCTTACTACATGCTGAGTGACCGGGAGTATGCTCACACGCGAAAGTACTCACCAGAGCTG
CTGAAAAAGATAGGTCTGTATGTTGATTTTCGTGCTATTTGGAAAGCTGTTGGTTGGCAGAGATTTGCTGTGGATGTCAC
AGTTGTTATCGACTACTTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30405.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis