Browse Element(s) Details


OsAffx.3045.1.S1_at

Description tigr:9630.m05153
TID=OsAffx.3045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5233011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3045.1.S1_at--1039--8211Chr02:32023842..32023866 (25 bp)
GGCAAAACTCGTCCCCAGATGAGAG
LOC_Os02g52330
OsAffx.3045.1.S1_at--67--8911Chr02:32023823..32023847 (25 bp)
TGAGAGACGCTCTAACCTCGAAGCA
LOC_Os02g52330
OsAffx.3045.1.S1_at--224--4111Chr02:32023805..32023829 (25 bp)
CGAAGCACGCTTTGCCATTGCCAAT
LOC_Os02g52330
OsAffx.3045.1.S1_at--358--4431Chr02:32023792..32023816 (25 bp)
GCCATTGCCAATGTCAAGAAGTTCG
LOC_Os02g52330
OsAffx.3045.1.S1_at--1024--3231Chr02:32023778..32023802 (25 bp)
CAAGAAGTTCGGTTCATCCGTTCAT
LOC_Os02g52330
OsAffx.3045.1.S1_at--957--551Chr02:32023763..32023787 (25 bp)
ATCCGTTCATGCTGGCAGGAGGCTA
LOC_Os02g52330
OsAffx.3045.1.S1_at--292--3531Chr02:32023756..32023780 (25 bp)
CATGCTGGCAGGAGGCTACGAGCCT
LOC_Os02g52330
OsAffx.3045.1.S1_at--743--5531Chr02:32023728..32023752 (25 bp)
GAAACACCGTTCCTTGTCAGAATCA
LOC_Os02g52330
OsAffx.3045.1.S1_at--871--6691Chr02:32023720..32023744 (25 bp)
GTTCCTTGTCAGAATCATGTCTGGT
LOC_Os02g52330
OsAffx.3045.1.S1_at--292--9631Chr02:32023706..32023730 (25 bp)
TCATGTCTGGTTATTGACCTTGCAA
LOC_Os02g52330
OsAffx.3045.1.S1_at--455--5831Chr02:32023691..32023715 (25 bp)
GACCTTGCAAGAAATTCAGTTGGTA
LOC_Os02g52330
Target Sequence 
GGCAAAACTCGTCCCCAGATGAGAGACGCTCTAACCTCGAAGCACGCTTTGCCATTGCCAATGTCAAGAAGTTCGGTTCA
TCCGTTCATGCTGGCAGGAGGCTACGAGCCTGCCGAAACACCGTTCCTTGTCAGAATCATGTCTGGTTATTGACCTTGCA
AGAAATTCAGTTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis