Browse Element(s) Details


OsAffx.30458.2.S1_at

Description tigr:9638.m01657
TID=OsAffx.30458.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2012011/11D-mannose binding lectin family protein, expressed
LOC_Os04g344101/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20070Os.20602.2.S1_x_at11/1110+9744749..9746929hAT family dimerisation domain containing protein
LOC_Os10g20080OsAffx.18305.1.S1_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080OsAffx.18305.1.S1_x_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080Os.53269.1.S1_at1/1110+9748013..9749270hypothetical protein
LOC_Os10g20090Os.11623.1.S1_a_at11/1110+9758099..9763654Cellulose synthase family protein, expressed
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein
LOC_Os10g20120OsAffx.30458.2.S1_at11/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20120OsAffx.30458.1.S1_x_at3/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20139OsAffx.30457.3.S1_s_at11/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20139OsAffx.30457.1.S1_s_at10/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20160OsAffx.30458.1.S1_x_at11/1110+9789099..9791522D-mannose binding lectin family protein
LOC_Os10g20160OsAffx.30458.1.S1_at11/1110+9789099..9791522D-mannose binding lectin family protein
LOC_Os10g20170Os.47999.3.S1_x_at5/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20170OsAffx.20691.1.S1_x_at1/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20170OsAffx.21161.1.S1_at1/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30458.2.S1_at--374--6691Chr10:9770966..9770990 (25 bp)
GTTGCCAAAGGCCTTGCTTACTTGC
LOC_Os10g20120
OsAffx.30458.2.S1_at--293--2311Chr10:9770960..9770984 (25 bp)
AAAGGCCTTGCTTACTTGCACGATA
LOC_Os10g20120
OsAffx.30458.2.S1_at--269--4451Chr10:9770956..9770980 (25 bp)
GCCTTGCTTACTTGCACGATAGTTG
LOC_Os10g20120
OsAffx.30458.2.S1_at--625--4971Chr10:9770879..9770903 (25 bp)
GCATCTTTTGTTCCCAAAATAGCAG
LOC_Os10g20120
OsAffx.30458.2.S1_at--979--171Chr10:9770823..9770847 (25 bp)
ATTTAGTCATGCTCTTACTACAGTA
LOC_Os10g20120
OsAffx.30458.2.S1_at--992--10431Chr10:9770821..9770845 (25 bp)
TTAGTCATGCTCTTACTACAGTAAG
LOC_Os10g20120
OsAffx.30458.2.S1_at--704--8571Chr10:9770768..9770792 (25 bp)
TGGATTAGCGGGACTGTTGTTACAT
LOC_Os10g20120
OsAffx.30458.2.S1_at--970--9991Chr10:9770763..9770787 (25 bp)
TAGCGGGACTGTTGTTACATCTAAA
LOC_Os10g20120
OsAffx.30458.2.S1_at--646--7572Chr04:20650323..20650342 (20 bp)
GGACTGTTGTTACATCTAAAGTAGA
LOC_Os04g34410
OsAffx.30458.2.S1_at--365--1411Chr10:9770517..9770541 (25 bp)
AGACAGTGAGTTTGACCGCCCGACA
LOC_Os10g20120
OsAffx.30458.2.S1_at--560--2111Chr10:9770515..9770539 (25 bp)
ACAGTGAGTTTGACCGCCCGACAAT
LOC_Os10g20120
Target Sequence 
GTTGCCAAAGGCCTTGCTTACTTGCACGATAGTTGTCGAGATTGCATTATACATTGTGATATCAAGCCAGAGAATATACT
TCTTGATGCATCTTTTGTTCCCAAAATAGCAGATTTTGGAATGGCAAAGGTTTTGGGGAGAGAATTTAGTCATGCTCTTA
CTACAGTAAGAGGAACTATTGGATATCTTGCCCCTGAATGGATTAGCGGGACTGTTGTTACATCTAAAGTAGATGTTTAC
AGCTATGGGATGGTTTTGTTTGAAATAATATCAGGAAGGAGGAACTCAAATCAAGAATATTGTAGGGGTCATTCGGCCTA
TTTTCCTATGCAAGTTGCCCGCCAGCTTATCAATGGAGGGATTGAAAATTTGGTGGATGCAAAATTACATGGTGATGTGA
ATCTCGAGGAGGTTGAACGAGTTTGCAAAGTTGCTTGTTGGTGTATTCAAGACAGTGAGTTTGACCGCCCGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30458.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis