Browse Element(s) Details


OsAffx.30473.1.S1_x_at

Description gb:NM_190863.1
DB_XREF= gi:34908809
GEN=P0557A01.24
TID=OsAffx.30473.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) photosystem II D2 protein (P0557A01.24), mRNA.
PROD=photosystem II D2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5804011/11Photosystem II D2 protein, putative, expressed
LOC_Os10g2121011/11Photosystem II D2 protein, putative
LOC_Os04g1680011/11Photosystem II D2 protein, putative
LOC_Os10g4168911/11Photosystem II D2 protein, putative
LOC_Os02g2463010/11Photosystem II D2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0009781biological_processphotosynthetic water oxidation
GO:0019684biological_processphotosynthesis, light reaction
GO:0009523cellular_componentphotosystem II
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009539cellular_componentphotosystem II reaction center
GO:0016168molecular_functionchlorophyll binding
GO:0045157molecular_functionelectron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30473.1.S1_x_at--962--6836Chr10:10485107..10485131 (25 bp)
GTTTCCGTATTCCTGATTTATCCAC
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--551--4236Chr10:10485158..10485182 (25 bp)
CCGAGTTTTGGCGTAGCAGCGATAT
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--133--1656Chr10:10485175..10485199 (25 bp)
AGCGATATTTCGATTCATCCTCTTC
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--614--7395Chr10:10485324..10485348 (25 bp)
GTGATGGTGCAAATACCTTCCGCGC
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--654--2976Chr10:10485382..10485406 (25 bp)
AATGGTCACCGCTAATCGCTTTTGG
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--261--10357Chr10:10485455..10485479 (25 bp)
TTTATGCTATTTGTACCGGTCACCG
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--15--1796Chr10:10485469..10485493 (25 bp)
ACCGGTCACCGGTTTATGGATGAGT
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--4--8496Chr10:10485513..10485537 (25 bp)
TGGCTCTGAACCTACGTGCCTATGA
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--529--4457Chr10:10485530..10485554 (25 bp)
GCCTATGACTTCGTTTCCCAGGAAA
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--758--6876Chr10:10485618..10485642 (25 bp)
GTATTCGTGCGTGGATGGCAGCTCA
LOC_Os10g21210
OsAffx.30473.1.S1_x_at--21--8276Chr10:10485634..10485658 (25 bp)
GGCAGCTCAGGATCAGCCTCATGAA
LOC_Os10g21210
Target Sequence 
GTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCG
ATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCG
CGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC
GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGC
TTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAG
TCGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT
TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30473.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis