Browse Element(s) Details


OsAffx.30488.1.S1_at

Description tigr:9638.m01826
TID=OsAffx.30488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2177010/11hypothetical protein
LOC_Os03g527941/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os05g229001/11retrotransposon protein, putative, LINE subclass
LOC_Os05g238101/11retrotransposon protein, putative, unclassified
LOC_Os01g326101/11expressed protein
LOC_Os11g207501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21740OsAffx.30487.1.S1_at11/1110+10827099..10828556hypothetical protein
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein
LOC_Os10g21790Os.46695.1.S1_at8/1110+10854246..10854892TMV-induced protein I, putative, expressed
LOC_Os10g21800OsAffx.30489.1.S1_at11/1110+10855596..10857201Leucine Rich Repeat family protein, expressed
LOC_Os10g21810Os.8454.1.S1_at11/1110+10860937..10871684histidine kinase 3, putative, expressed
LOC_Os10g21810Os.8454.1.S1_s_at3/1110+10860937..10871684histidine kinase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0043247biological_processtelomere maintenance in response to DNA damage
GO:0000166molecular_functionnucleotide binding
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30488.1.S1_at--266--4331Chr10:10839228..10839252 (25 bp)
CCATGGCCGGATCTTCACTCTCGGG
LOC_Os10g21770
OsAffx.30488.1.S1_at--807--3791Chr10:10839386..10839410 (25 bp)
CTCGCATTTTTTGGGCTAGTCTCAT
LOC_Os10g21770
OsAffx.30488.1.S1_at--828--6031Chr10:10839421..10839445 (25 bp)
GAGTCTTTTCAAAGGATTGGTTCCT
LOC_Os10g21770
OsAffx.30488.1.S1_at--106--7931Chr10:10839434..10839458 (25 bp)
GGATTGGTTCCTTCTTAATACAAGA
LOC_Os10g21770
OsAffx.30488.1.S1_at--1148--851Chr10:10839458..10839482 (25 bp)
ATGGCTCACGAGTAAGATTTTGGGA
LOC_Os10g21770
OsAffx.30488.1.S1_at--219--5957Chr10:10839511..10839535 (25 bp)
GAGAAGGAGTATCCTAACCTTTACA
LOC_Os10g21770
OsAffx.30488.1.S1_at--820--6251NONE
GATGGTGGCCAAGGTCATTTTCATG
NONE
OsAffx.30488.1.S1_at--1041--5551Chr10:10840229..10840253 (25 bp)
GAAATGGTTAAGAGCTATTGCAAGC
LOC_Os10g21770
OsAffx.30488.1.S1_at--325--5171Chr10:10840248..10840272 (25 bp)
GCAAGCTGCTAGAGAAGCGTGCGTT
LOC_Os10g21770
OsAffx.30488.1.S1_at--701--5411Chr10:10840261..10840285 (25 bp)
GAAGCGTGCGTTGGAGTTCTTCTCC
LOC_Os10g21770
OsAffx.30488.1.S1_at--129--6072Chr11:2210819..2210997 (25 bp)
GAGTTCTTCTCCATGTATGGTGGGA
NONE
Target Sequence 
CCATGGCCGGATCTTCACTCTCGGGGAGGGATCTCCACTCCCCATTGTCAGAGAGATCGCCCCCTCGACATCAATGAAGA
AGGAATTTGGCAAAGCTTGCTTAGGAAAAAAATACCTGACAAAGAAACAATTTTGCAAGTCCAAAAAAGACCAGGGGACT
CGCATTTTTTGGGCTAGTCTCATGTTAGACAAAGAGTCTTTTCAAAGGATTGGTTCCTTCTTAATACAAGATGGCTCACG
AGTAAGATTTTGGGAAGATTGTTGGATAGGAGTTCAATCCTTTGAGAAGGAGTATCCTAACCTTTACAGTCTAGTTAGAA
ATAAAAATGAGATGGTGGCCAAGGTCATTTTCATGGGGACGCTTTGGGCAAGGACTTGGCCTTTACTTCTTAAAGGAGTT
GACGAAGAAATGGTTAAGAGCTATTGCAAGCTGCTAGAGAAGCGTGCGTTGGAGTTCTTCTCCATGTATGGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis