Browse Element(s) Details


OsAffx.30510.1.S1_at

Description tigr:9638.m01942
TID=OsAffx.30510.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2291011/11hypothetical protein
LOC_Os11g396181/11S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os08g389801/11Chloride channel protein CLC-f, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed
LOC_Os10g22880NANA10+11556207..11557209hypothetical protein
LOC_Os10g22890OsAffx.8200.1.S1_at11/1110+11565120..11568331Leucine Rich Repeat family protein
LOC_Os10g22900OsAffx.30509.1.S1_at11/1110+11568857..11570381hypothetical protein
LOC_Os10g22910OsAffx.30510.1.S1_at11/1110+11572843..11573073hypothetical protein
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0003723molecular_functionRNA binding
GO:0004540molecular_functionribonuclease activity
GO:0005247molecular_functionvoltage-gated chloride channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30510.1.S1_at--330--8651Chr10:11572875..11572899 (25 bp)
TGGGCTCTCCCATATAGCACCGTTC
LOC_Os10g22910
OsAffx.30510.1.S1_at--71--9511Chr10:11572880..11572904 (25 bp)
TCTCCCATATAGCACCGTTCTGGAT
LOC_Os10g22910
OsAffx.30510.1.S1_at--693--9311Chr10:11572882..11572906 (25 bp)
TCCCATATAGCACCGTTCTGGATGC
LOC_Os10g22910
OsAffx.30510.1.S1_at--1111--231Chr10:11572886..11572910 (25 bp)
ATATAGCACCGTTCTGGATGCCATC
LOC_Os10g22910
OsAffx.30510.1.S1_at--681--291Chr10:11572888..11572912 (25 bp)
ATAGCACCGTTCTGGATGCCATCCA
LOC_Os10g22910
OsAffx.30510.1.S1_at--220--1511Chr10:11572890..11572914 (25 bp)
AGCACCGTTCTGGATGCCATCCATG
LOC_Os10g22910
OsAffx.30510.1.S1_at--141--3371Chr10:11572892..11572916 (25 bp)
CACCGTTCTGGATGCCATCCATGGA
LOC_Os10g22910
OsAffx.30510.1.S1_at--360--3954Chr10:11573004..11573028 (25 bp)
CGGAGGACATGAAGGGCAATTTTGT
LOC_Os10g22910
OsAffx.30510.1.S1_at--902--1072Chr10:11573016..11573040 (25 bp)
AGGGCAATTTTGTCTCATCATCTGG
LOC_Os10g22910
OsAffx.30510.1.S1_at--173--8233Chr11:23098355..23098505 (24 bp)
GGCAATTTTGTCTCATCATCTGGTG
LOC_Os11g39618
OsAffx.30510.1.S1_at--1041--5191Chr10:11573019..11573043 (25 bp)
GCAATTTTGTCTCATCATCTGGTGG
LOC_Os10g22910
Target Sequence 
TGGGCTCTCCCATATAGCACCGTTCTGGATGCCATCCATGGAGGAGGACGAGGAGGAAGACGGTGAGCTGCTCGTGGTGG
ACATGGAGATGGCCGGCGAGGACAAGCTCCTCTTCCTCAATGGCGGCGGCGGAGGACATGAAGGGCAATTTTGTCTCATC
ATCTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis