Browse Element(s) Details


OsAffx.30558.1.S1_at

Description tigr:9638.m02318
TID=OsAffx.30558.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2707011/11hypothetical protein
LOC_Os10g2721011/11hypothetical protein
LOC_Os01g586801/11Apurinic endonuclease-redox protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein
LOC_Os10g27110Os.5836.1.A1_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27110Os.5836.1.A1_x_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27120OsAffx.6780.1.S1_x_at11/1110+13961465..13962226lipase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045941biological_processpositive regulation of transcription
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30558.1.S1_at--1162--7852Chr10:13938928..13938952 (25 bp)
GGTATCAAATGTGCATCGTGCATGC
LOC_Os10g27070
OsAffx.30558.1.S1_at--898--10052Chr10:13939288..13939312 (25 bp)
TAGTAAACATGATTCCCTGGTGCAA
LOC_Os10g27070
OsAffx.30558.1.S1_at--977--2492Chr10:13939314..13939338 (25 bp)
AACATGTGGATTTTGGTATACTGGA
LOC_Os10g27070
OsAffx.30558.1.S1_at--88--352Chr10:13939346..13939370 (25 bp)
ATACAAGATCCAACTGCGACGCCAA
LOC_Os10g27070
OsAffx.30558.1.S1_at--531--4612Chr10:13939361..13939385 (25 bp)
GCGACGCCAATGTATCTGCCAATGG
LOC_Os10g27070
OsAffx.30558.1.S1_at--586--8212Chr10:13939384..13939408 (25 bp)
GGAATTCTTGAAAACCATTACATGT
LOC_Os10g27070
OsAffx.30558.1.S1_at--321--132Chr10:13939400..13939424 (25 bp)
ATTACATGTGACTTCTCAAAGGAAC
LOC_Os10g27070
OsAffx.30558.1.S1_at--1071--6773Chr10:13939493..13939512 (20 bp)
GTTTACAAGGGTGCGTTTGGATCCA
LOC_Os10g27070
OsAffx.30558.1.S1_at--867--7778Chr10:13939497..13939521 (25 bp)
GGTGCGTTTGGATCCAAGGCTAGCA
LOC_Os10g27070
OsAffx.30558.1.S1_at--635--3914Chr10:13939532..13939556 (25 bp)
CTGGCCTGGCAAGGACAGTCGTTTG
LOC_Os10g27070
OsAffx.30558.1.S1_at--241--2934Chr10:13939542..13939566 (25 bp)
AAGGACAGTCGTTTGGAATCAGAAA
LOC_Os10g27070
Target Sequence 
GGTATCAAATGTGCATCGTGCATGCAAGGAATGGAAGGATCAACTAGTAAACATGATTCCCTGGTGCAAAAACATGTGGA
TTTTGGTATACTGGAGAACAACATACAAGATCCAACTGCGACGCCAATGTATCTGCCAATGGAATTCTTGAAAACCATTA
CATGTGACTTCTCAAAGGAACAAGAGCTTGGCAGGGGTGGGTATGGAGTGGTTTACAAGGGTGCGTTTGGATCCAAGGCT
AGCAGGGGCCTAGCCTGGCCTGGCAAGGACAGTCGTTTGGAATCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis