Browse Element(s) Details


OsAffx.30613.3.S1_x_at

Description tigr:9635.m03367
TID=OsAffx.30613.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BED zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3217011/11hAT family dimerisation domain containing protein
LOC_Os02g1425011/11hAT family dimerisation domain containing protein
LOC_Os07g3412011/11BED zinc finger family protein
LOC_Os10g3068010/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32120Os.6327.1.S1_at11/112+18974997..18978323Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os02g32130NANA2+18979121..18979324hypothetical protein
LOC_Os02g32140OsAffx.2825.1.S1_x_at1/112+18981231..18982637AP2 domain containing protein, expressed
LOC_Os02g32150OsAffx.12315.1.S1_at11/112+18985087..18985701hypothetical protein
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30613.3.S1_x_at--528--2055Chr02:18997337..18997361 (25 bp)
ACTTATCTCATGCTTAGCACTGCAG
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--902--10014Chr02:18997351..18997375 (25 bp)
TAGCACTGCAGTTTTGTATCAAGAT
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--441--8774Chr02:18997407..18997431 (25 bp)
TGTATACTCCTTATTGTCCATCAAA
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--1072--134Chr02:18997494..18997518 (25 bp)
AGGCTTTTTCTGGTAGTAAGTATTG
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--97--7014Chr02:18997518..18997542 (25 bp)
GTACTGCAAATCTTTTCTTTCCTAA
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--912--414Chr02:18997527..18997551 (25 bp)
ATCTTTTCTTTCCTAAGGCTTGTGG
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--202--934Chr02:18997542..18997566 (25 bp)
AGGCTTGTGGTATTTATTTGGCTAT
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--583--7833Chr02:18997575..18997599 (25 bp)
GGTCAACTAGTGCTGATCCAAACAT
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--528--5714Chr02:18997609..18997633 (25 bp)
GACTAAATTGATGTCAGCCAAATAT
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--285--6274Chr02:18997649..18997673 (25 bp)
GATGTGCATGGTATTTTGGCTATTG
LOC_Os02g32170
OsAffx.30613.3.S1_x_at--189--8314Chr02:18997666..18997690 (25 bp)
GGCTATTGCTAGTGTTTTGGATCCT
LOC_Os02g32170
Target Sequence 
ACTTATCTCATGCTTAGCACTGCAGTTTTGTATCAAGATGTCTTTACAAAACTTGGAACTCGTGAAAAAATGTATACTCC
TTATTGTCCATCAAATGATGATTGGAAGTTTGCTAGGGAGCTTTGTGATAGATTGAAGATTTTTTATGATGCAACAGAGG
CTTTTTCTGGTAGTAAGTATTGTACTGCAAATCTTTTCTTTCCTAAGGCTTGTGGTATTTATTTGGCTATGAGAAAATGG
TCAACTAGTGCTGATCCAAACATTATAACAATGACTAAATTGATGTCAGCCAAATATGAGAAGTATTGGAAGGATGTGCA
TGGTATTTTGGCTATTGCTAGTGTTTTGGATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30613.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis