Browse Element(s) Details


OsAffx.30673.1.S1_at

Description tigr:9638.m03062
TID=OsAffx.30673.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ABA-responsive protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3473011/11GRAM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34704NANA10+18194187..18194798hypothetical protein
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30673.1.S1_at--418--10631Chr10:18216452..18216476 (25 bp)
TTCCCGGTCTTCTTTGGTTCATAAG
LOC_Os10g34730
OsAffx.30673.1.S1_at--1007--6791Chr10:18216106..18216130 (25 bp)
GTTTAGGTGCAAAGGTTCTCCAAGC
LOC_Os10g34730
OsAffx.30673.1.S1_at--1159--7891Chr10:18216093..18216117 (25 bp)
GGTTCTCCAAGCTGGTAGCATCGAC
LOC_Os10g34730
OsAffx.30673.1.S1_at--235--7411Chr10:18216065..18216089 (25 bp)
GTGTTCAGGCAATACTTTCAAGTCG
LOC_Os10g34730
OsAffx.30673.1.S1_at--150--1131Chr10:18216010..18216034 (25 bp)
AGTGCTATCTTTCAACCACAGCTGG
LOC_Os10g34730
OsAffx.30673.1.S1_at--190--311Chr10:18215981..18216005 (25 bp)
ATAGCTGGCATGCTTTTCATCTCCA
LOC_Os10g34730
OsAffx.30673.1.S1_at--966--6571Chr10:18215949..18215973 (25 bp)
GATTGCCTTCCACAGTGATAGGCCT
LOC_Os10g34730
OsAffx.30673.1.S1_at--908--6491Chr10:18215933..18215957 (25 bp)
GATAGGCCTTTGGATTTGACATCAC
LOC_Os10g34730
OsAffx.30673.1.S1_at--261--3731Chr10:18215756..18215907 (25 bp)
CTACAAGGTCTTGATCCCAGCAAAG
LOC_Os10g34730
OsAffx.30673.1.S1_at--361--6931Chr10:18215671..18215695 (25 bp)
GTAGTTACTGTTGACGGCTTTGATT
LOC_Os10g34730
OsAffx.30673.1.S1_at--861--7671Chr10:18215635..18215659 (25 bp)
GGGTTCATCAGCCACACAAAATCAT
LOC_Os10g34730
Target Sequence 
TTCCCGGTCTTCTTTGGTTCATAAGAAGGGCAAAAAGAATTCCATCATTTATCGGATGAGCAAACTGAGCCAGAAAACAG
ATAGTTATGTGCAGGGTTTCAAAGAACACATAACTCTGGGACCAAAGATTTCAGACACACTCAAAGGGAAATTGAGTTTA
GGTGCAAAGGTTCTCCAAGCTGGTAGCATCGACAAAGTGTTCAGGCAATACTTTCAAGTCGACAAAGATGAGAAGCTATT
GAAGGCTTTCCAGTGCTATCTTTCAACCACAGCTGGCCCTATAGCTGGCATGCTTTTCATCTCCACTGAAAAGATTGCCT
TCCACAGTGATAGGCCTTTGGATTTGACATCACCAAAAGGAGGCATAACAAGGGTGCCCTACAAGGTCTTGATCCCAGCA
AAGAGGATAAAGAGTGCTGCAGTGAGAGAAAATTTGTACAATCCTGACGAGAAGTACATCGATGTAGTTACTGTTGACGG
CTTTGATTTTTGGTTTATGGGGTTCATCAGCCACACAAAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis