Browse Element(s) Details


OsAffx.30677.1.S1_x_at

Description tigr:9638.m03105
TID=OsAffx.30677.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3516010/11hypothetical protein
LOC_Os06g377905/11hypothetical protein
LOC_Os05g344905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35120OsAffx.30679.2.S1_x_at11/1110+18415958..18416449hypothetical protein
LOC_Os10g35130Os.5140.1.S1_at11/1110+18417659..18420680expressed protein
LOC_Os10g35140Os.17692.1.S1_at11/1110+18421795..18424392Integral membrane protein DUF6 containing protein, expressed
LOC_Os10g35150Os.8937.1.S1_at10/1110+18424581..18428480expressed protein
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30677.1.S1_x_at--232--51Chr10:18441546..18441570 (25 bp)
ATTGCTAGAGGTGCTGCTGAGAATC
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--371--573Chr10:18441464..18441488 (25 bp)
ATCCTAGTGATGGTAGTGCTGCAGC
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--262--5052Chr10:18441444..18441468 (25 bp)
GCAGCAAGGTTTTCCATTGATATCG
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--1025--4113Chr10:18441334..18441358 (25 bp)
CCCAATACGCCACTTGTTACTAGGT
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--1098--3712Chr10:18441234..18441258 (25 bp)
CTACAGGTGAGCAATTCCAAGGAAA
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--59--5893Chr10:18441204..18441228 (25 bp)
GAGCTACAGGTACCATGGGATCCAG
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--874--573Chr10:18441185..18441209 (25 bp)
ATCCAGGAGGTTTTCTTCATCGGCT
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--963--3371NONE
CACCACGGTGGCGAGATTATCAGAC
NONE
OsAffx.30677.1.S1_x_at--32--4611Chr10:18440092..18440116 (25 bp)
GCGAGATTATCAGACAATGGCGAGC
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--708--2231Chr10:18440079..18440103 (25 bp)
ACAATGGCGAGCTCCGTCACCATTT
LOC_Os10g35160
OsAffx.30677.1.S1_x_at--806--7091Chr10:18440064..18440088 (25 bp)
GTCACCATTTTTCCCACAAGGAGGA
LOC_Os10g35160
Target Sequence 
ATTGCTAGAGGTGCTGCTGAGAATCAGAACAGGAAGGTCAAGACATGTGGTTATGATTCCATTTTTGATTTCTGTGAGAA
CAATCCTAGTGATGGTAGTGCTGCAGCAAGGTTTTCCATTGATATCGGGACAGATTCAGAGATGATATATGCATCAATTG
CAAACAGGGATTATTGGTCTGTTAAATTATTGGTGGTCATAAAAGAGGGGTGCCCAATACGCCACTTGTTACTAGGTGAT
ATCAAGAAAGAACAATTGCTGCAATGTGAGACATTCAGTACAAGACAGACAAATACAGAGCAAGTTATCAAGCTACAGGT
GAGCAATTCCAAGGAAATACAAGAGCTACAGGTACCATGGGATCCAGGAGGTTTTCTTCATCGGCTTGGGGACAAGCCAA
ATTTCAAGAAGAGGGGATTGTCAGGGACTCGGGTGGGCTGCACATGGGCCGCTGGCTACACCACGGTGGCGAGATTATCA
GACAATGGCGAGCTCCGTCACCATTTTTCCCACAAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30677.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis