Browse Element(s) Details


OsAffx.30679.1.S1_at

Description tigr:9638.m03124
TID=OsAffx.30679.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative galactosidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3533011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35370Os.9230.1.S1_x_at11/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_x_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30679.1.S1_at--363--9391Chr10:18558689..18558713 (25 bp)
TCGATCCGGGCGTCGCGCAGCACAT
LOC_Os10g35330
OsAffx.30679.1.S1_at--340--5531Chr10:18557224..18557248 (25 bp)
GAAAACGACAAATGGGCTGCCTGCC
LOC_Os10g35330
OsAffx.30679.1.S1_at--631--2571Chr10:18556261..18556282 (22 bp)
AACGGTTTGGGCCAGGTCACTCAGC
LOC_Os10g35330
OsAffx.30679.1.S1_at--51--6271Chr10:18556224..18556248 (25 bp)
GATGTGGTACTCTGGAACAGGCCAT
LOC_Os10g35330
OsAffx.30679.1.S1_at--505--8171Chr10:18556211..18556235 (25 bp)
GGAACAGGCCATCACTGCGCATTGG
LOC_Os10g35330
OsAffx.30679.1.S1_at--30--391Chr10:18556201..18556225 (25 bp)
ATCACTGCGCATTGGTCGAGCATTG
LOC_Os10g35330
OsAffx.30679.1.S1_at--786--4071Chr10:18556185..18556209 (25 bp)
CGAGCATTGGACTCACTGGGTCAGT
LOC_Os10g35330
OsAffx.30679.1.S1_at--938--7111Chr10:18556166..18556190 (25 bp)
GTCAGTGGCTGTCACTGCTCGTGAT
LOC_Os10g35330
OsAffx.30679.1.S1_at--410--8851Chr10:18555956..18556169 (25 bp)
TGATCTATGGGCGTTTGTTGTGAAA
LOC_Os10g35330
OsAffx.30679.1.S1_at--544--6671Chr10:18555931..18555955 (25 bp)
GTTGCAGCAACAAAGCGGCATTCCT
LOC_Os10g35330
OsAffx.30679.1.S1_at--317--4951Chr10:18555914..18555938 (25 bp)
GCATTCCTGCCACTATCTTATAAAG
LOC_Os10g35330
Target Sequence 
TCGATCCGGGCGTCGCGCAGCACATGTTCGTCGACCAAGAACTCAGGCAGGAAATCGCCGCCCAGGTTCACGAGAACAGG
GAATTCGACGCCTTCGTCCTCTACCAGTACCGCACCAAGGGCTACGCCGAGATCCAGCAGGAGGTCACCGACGACGACGA
CGACGACGACGAGACGAAAACGACAAATGGGCTGCCTGCCTATGCTGGACCTGGTGGATGGAACGGTTTGGGCCAGGTCA
CTCAGCAACAACAGGAAGGATGTGGTACTCTGGAACAGGCCATCACTGCGCATTGGTCGAGCATTGGACTCACTGGGTCA
GTGGCTGTCACTGCTCGTGATCTATGGGCGTTTGTTGTGAAAGTTGCAGCAACAAAGCGGCATTCCTGCCACTATCTTAT
AAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis