Browse Element(s) Details


OsAffx.30721.3.S1_at

Description tigr:9638.m03546
TID=OsAffx.30721.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nucleoid DNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3927011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39220Os.10820.1.S1_at10/1110+20606875..20610738tobamovirus multiplication protein 3, putative, expressed
LOC_Os10g39230Os.5988.1.S1_at11/1110+20611078..20618279tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os10g39250OsAffx.30720.1.S1_at6/1110+20625347..20626178hypothetical protein
LOC_Os10g39260Os.6792.1.S1_at7/1110+20627200..20628603Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39270OsAffx.30721.3.S1_at11/1110+20631449..20632642Eukaryotic aspartyl protease family protein
LOC_Os10g39280OsAffx.21973.1.S1_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39280OsAffx.20167.1.S1_x_at1/1110+20635091..20637145hypothetical protein
LOC_Os10g39300Os.6792.1.S1_at7/1110+20641556..20642957Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39310OsAffx.30721.5.S1_at11/1110+20649378..20650526Eukaryotic aspartyl protease family protein, expressed
LOC_Os10g39320OsAffx.30721.2.S1_x_at11/1110+20653362..20654603Eukaryotic aspartyl protease family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30721.3.S1_at--564--6671Chr10:20632129..20632153 (25 bp)
GTTCGTCAAGACCTCTCCCAACGAT
LOC_Os10g39270
OsAffx.30721.3.S1_at--225--9511Chr10:20632142..20632166 (25 bp)
TCTCCCAACGATGGCATGAGCCAAT
LOC_Os10g39270
OsAffx.30721.3.S1_at--644--691Chr10:20632157..20632181 (25 bp)
ATGAGCCAATATTATCCGATCGAGT
LOC_Os10g39270
OsAffx.30721.3.S1_at--285--5631Chr10:20632280..20632304 (25 bp)
GACAGCGTGTACCAGGAATTCAAGA
LOC_Os10g39270
OsAffx.30721.3.S1_at--249--3631Chr10:20632360..20632384 (25 bp)
CTTCGAGGTCTGCTTCCCGAAGGCG
LOC_Os10g39270
OsAffx.30721.3.S1_at--460--4591Chr10:20632451..20632475 (25 bp)
GCGAACTACCTGTTCGACGTTGGGA
LOC_Os10g39270
OsAffx.30721.3.S1_at--82--5731Chr10:20632466..20632490 (25 bp)
GACGTTGGGAACGACACGGTTTGCT
LOC_Os10g39270
OsAffx.30721.3.S1_at--918--2591Chr10:20632475..20632499 (25 bp)
AACGACACGGTTTGCTTGTCGGTGA
LOC_Os10g39270
OsAffx.30721.3.S1_at--803--4931Chr10:20632488..20632512 (25 bp)
GCTTGTCGGTGATGAGCATCGCGCT
LOC_Os10g39270
OsAffx.30721.3.S1_at--1065--3971Chr10:20632494..20632518 (25 bp)
CGGTGATGAGCATCGCGCTGCTGAA
LOC_Os10g39270
OsAffx.30721.3.S1_at--163--2511Chr10:20632517..20632541 (25 bp)
AACATCACGGCGTTGGACGGGCTGA
LOC_Os10g39270
Target Sequence 
GTTCGTCAAGACCTCTCCCAACGATGGCATGAGCCAATATTATCCGATCGAGTTGGAGGAGATCAAGGCCGGCGACGCGA
CGATCACGATGCCTCGGGGCCGCAACACCGTCCTGGTCCAGACCGCCGTCGTGCGGGTCAGCTTGCTGGTCGACAGCGTG
TACCAGGAATTCAAGAAGGCGGTGATGGCTTCCGTCGGCGCCGCGCCGACGGCGACGCCGGTGGGGGCGCCCTTCGAGGT
CTGCTTCCCGAAGGCGGGGGTCAGCGGCGCGCCGGACCTCGTGTTCACGTTCCAGGCCGGCGCCGCGCTGACGGTGCCGC
CGGCGAACTACCTGTTCGACGTTGGGAACGACACGGTTTGCTTGTCGGTGATGAGCATCGCGCTGCTGAACATCACGGCG
TTGGACGGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30721.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis