Browse Element(s) Details


OsAffx.30767.1.S1_at

Description tigr:9639.m00054
TID=OsAffx.30767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ferritin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0153011/11Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os12g015309/11Ferritin 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01470NANA11+271765..279565retrotransposon protein, putative, unclassified
LOC_Os11g01480Os.18448.1.S1_s_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01480OsAffx.30765.1.S1_at11/1111+280488..282849myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os11g01490Os.28272.2.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_x_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01490Os.28272.1.S1_at11/1111+284152..289156outer membrane protein, OMP85 family protein
LOC_Os11g01500NANA11+290960..291905hypothetical protein
LOC_Os11g01510Os.5283.1.S1_at11/1111+294669..300588Ubiquitin-activating enzyme E1 2, putative, expressed
LOC_Os11g01520NANA11+301445..301804hypothetical protein
LOC_Os11g01530OsAffx.30767.1.S1_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.4.S1_s_at11/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01530Os.12096.3.S1_x_at1/1111+304439..306720Ferritin 1, chloroplast precursor, putative, expressed
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein
LOC_Os11g01550Os.56072.1.S1_at7/1111+313616..314451LOB domain protein 12, putative, expressed
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006826biological_processiron ion transport
GO:0006879biological_processiron ion homeostasis
GO:0009617biological_processresponse to bacteria
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010039biological_processresponse to iron ion
GO:0042542biological_processresponse to hydrogen peroxide
GO:0009507cellular_componentchloroplast
GO:0005506molecular_functioniron ion binding
GO:0008199molecular_functionferric iron binding
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30767.1.S1_at--768--5932Chr12:322318..322342 (25 bp)
GAGCAGATCAAGTCTGTTTTCCTCC
LOC_Os12g01530
OsAffx.30767.1.S1_at--818--5032Chr12:322316..322340 (25 bp)
GCAGATCAAGTCTGTTTTCCTCCTC
LOC_Os12g01530
OsAffx.30767.1.S1_at--82--9692Chr12:322287..322311 (25 bp)
TCACTCTGCCTTCCATTTTTGAATT
LOC_Os12g01530
OsAffx.30767.1.S1_at--362--4452Chr12:322280..322304 (25 bp)
GCCTTCCATTTTTGAATTTCTATTC
LOC_Os12g01530
OsAffx.30767.1.S1_at--808--3671Chr11:306009..306324 (25 bp)
CTATTCCCCTTTCATTTATATTCCG
LOC_Os11g01530
OsAffx.30767.1.S1_at--862--4291Chr11:306002..306317 (25 bp)
CCTTTCATTTATATTCCGAATTGGA
LOC_Os11g01530
OsAffx.30767.1.S1_at--277--10632Chr12:321646..321670 (25 bp)
TTCCGAATTGGAATTCAATCCTAAA
LOC_Os12g01530
OsAffx.30767.1.S1_at--610--6072Chr12:321618..321641 (24 bp)
GAGTTCAATCTTTGCAGTGTGGAGT
LOC_Os12g01530
OsAffx.30767.1.S1_at--1132--7972Chr12:321200..321224 (25 bp)
GGATGCCTTGTATGGTGAGTTGCTT
LOC_Os12g01530
OsAffx.30767.1.S1_at--842--812Chr12:321189..321213 (25 bp)
ATGGTGAGTTGCTTTCAGCTTGTCC
LOC_Os12g01530
OsAffx.30767.1.S1_at--359--272Chr12:321159..321178 (20 bp)
ATATGTTTTTTATTCCATGGTGGCA
LOC_Os12g01530
Target Sequence 
GAGCAGATCAAGTCTGTTTTCCTCCTCCTCACTCTGCCTTCCATTTTTGAATTTCTATTCCCCTTTCATTTATATTCCGA
ATTGGAATTCAATCCTAAAAAAGAGTTCAATCTTTGCAGTGTGGAGTACAATGCATCGTACGCGTACCACTCCCTTTTCG
CCTACTTTGATCGTGACAACGTTGCTCTCAAGGGATTCGCCAAATTCTTCAAAGAATCCAGCGATGAGGAGAGGGATCAC
GCAGAGAAACTCATCAAGTACCAGAACATGCGTGGAGGCAGGGTGCGGCTCCAGTCCATCGTCACACCTTTGACAGAGTT
CGACCATCCTGAGAAAGGGGATGCCTTGTATGGTGAGTTGCTTTCAGCTTGTCCTATATATGTTTTTTATTCCATGGTGG
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis