Browse Element(s) Details


OsAffx.30786.1.S1_at

Description tigr:9639.m00182
TID=OsAffx.30786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0277011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02730Os.51048.1.S1_at11/1111+885243..886579Harpin-induced protein 1 containing protein, expressed
LOC_Os11g02740Os.54077.1.S1_at6/1111+888337..891231expressed protein
LOC_Os11g02750NANA11+895207..896154eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os11g02760Os.40337.1.S1_at11/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.40337.1.S1_s_at10/1111+904843..909139HIT domain containing protein
LOC_Os11g02760Os.17056.1.A1_at3/1111+904843..909139HIT domain containing protein
LOC_Os11g02770OsAffx.30786.1.S1_at11/1111+910478..911491hypothetical protein
LOC_Os11g02780OsAffx.22848.4.S1_at2/1111+920120..926078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02780OsAffx.22848.4.S1_x_at1/1111+920120..926078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02790NANA11+927194..927598transposon protein, putative, unclassified
LOC_Os11g02800Os.54328.1.S1_at2/1111+930358..931988hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30786.1.S1_at--553--1231Chr11:911314..911461 (25 bp)
AGTTGCGTTGGGTCAAATGTTAATT
LOC_Os11g02770
OsAffx.30786.1.S1_at--530--2971Chr11:910858..910879 (22 bp)
AATGTTAATTACTTCCACCAGCCTC
LOC_Os11g02770
OsAffx.30786.1.S1_at--403--3372Chr12:969599..969623 (25 bp)
CACCAGCCTCATCAAGCTATAGCTA
NONE
OsAffx.30786.1.S1_at--910--4872Chr12:969584..969608 (25 bp)
GCTATAGCTAGCATGAGAAGGATAC
NONE
OsAffx.30786.1.S1_at--273--5311Chr11:910812..910836 (25 bp)
GAAGGATACAGATACACCCCTCTCA
LOC_Os11g02770
OsAffx.30786.1.S1_at--556--7952Chr12:969365..969589 (25 bp)
GGATACAGATACACCCCTCTCATGG
NONE
OsAffx.30786.1.S1_at--561--4772Chr12:969351..969375 (25 bp)
GCTGCTCATGGATGGCCACGGCACG
NONE
OsAffx.30786.1.S1_at--483--6452Chr12:969299..969323 (25 bp)
GATCACCTTCTCATTCACTTCATTA
NONE
OsAffx.30786.1.S1_at--1153--10572Chr12:969292..969316 (25 bp)
TTCTCATTCACTTCATTACTTCTTC
NONE
OsAffx.30786.1.S1_at--986--9591Chr11:910524..910548 (25 bp)
TCATTACTTCTTCTCTAGCTCCACT
LOC_Os11g02770
OsAffx.30786.1.S1_at--496--3651Chr11:910515..910539 (25 bp)
CTTCTCTAGCTCCACTCGTTTATTG
LOC_Os11g02770
Target Sequence 
AGTTGCGTTGGGTCAAATGTTAATTACTTCCACCAGCCTCATCAAGCTATAGCTAGCATGAGAAGGATACAGATACACCC
CTCTCATGGCGGTGGCGGCGGCACCGGCGGCCGTGCACGTCGTCAGGCGGCAGATCAGCCGGTGGTGTACACGGTGTGGA
AGAGGTCCAGCATAGGCTTCCAGGGCACCGATGGCTTCTCCGTCTACGACTCCGCCGGCAAGCTCGCCTTCCGCGTCGAC
AACTACTCCCGCCGCCGCAAAGCTTTCGCCGGCGACCTGCTGCTCATGGATGGCCACGGCACGCCTCTTCTCTCCCTCAG
GCCGCAGGTCGATCACCTTCTCATTCACTTCATTACTTCTTCTCTAGCTCCACTCGTTTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis