Browse Element(s) Details


OsAffx.30792.1.S1_at

Description tigr:9639.m00236
TID=OsAffx.30792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-type apyrase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g032905/11GDA1/CD39 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03270OsAffx.30792.2.S1_at11/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.15801.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.47730.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03280OsAffx.667.1.S1_at7/1111+1209589..1213220transposon protein, putative, Mutator sub-class
LOC_Os11g03290Os.15801.1.S1_x_at10/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03290OsAffx.30792.1.S1_at5/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03300Os.35020.1.S1_at11/1111+1232929..1234980NAC domain transcription factor, putative, expressed
LOC_Os11g03310OsAffx.31559.2.S1_at11/1111+1240174..1241368No apical meristem protein
LOC_Os11g03320Os.25164.1.A1_at8/1111+1245705..1247228hypothetical protein
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30792.1.S1_at--460--7211Chr11:1225205..1225229 (25 bp)
GTCGATGGCTTTGGTATGTATATAT
LOC_Os11g03290
OsAffx.30792.1.S1_at--434--5471Chr11:1225243..1225267 (25 bp)
GAACTCATATCTATAAATAATGCAT
LOC_Os11g03290
OsAffx.30792.1.S1_at--946--5271Chr11:1225304..1225328 (25 bp)
GAATGGACCATATATATGACATATT
LOC_Os11g03290
OsAffx.30792.1.S1_at--689--671Chr11:1225319..1225343 (25 bp)
ATGACATATTTAGGTTTGGAGGCAA
LOC_Os11g03290
OsAffx.30792.1.S1_at--607--5631Chr11:1225321..1225345 (25 bp)
GACATATTTAGGTTTGGAGGCAACG
LOC_Os11g03290
OsAffx.30792.1.S1_at--406--3531Chr11:1225546..1225570 (25 bp)
CATGCATGCATATCCGTTGCTAAGT
NONE
OsAffx.30792.1.S1_at--73--3531Chr11:1225550..1225574 (25 bp)
CATGCATATCCGTTGCTAAGTAATA
NONE
OsAffx.30792.1.S1_at--226--4871Chr11:1225553..1225577 (25 bp)
GCATATCCGTTGCTAAGTAATAATA
NONE
OsAffx.30792.1.S1_at--755--1551Chr11:1225588..1225612 (25 bp)
AGCTTATTAATTTACATGGAGGCCG
NONE
OsAffx.30792.1.S1_at--190--10491Chr11:1225594..1225618 (25 bp)
TTAATTTACATGGAGGCCGGTGGCC
NONE
OsAffx.30792.1.S1_at--517--3111Chr11:1225596..1225620 (25 bp)
AATTTACATGGAGGCCGGTGGCCAT
NONE
Target Sequence 
GTCGATGGCTTTGGTATGTATATATAATTAAACAAATTGAACTCATATCTATAAATAATGCATATATGTATATTTGAATA
TTTGATGGACAAATTATATGAATGGACCATATATATGACATATTTAGGTTTGGAGGCAACGAAGGAGATGACGCTGGTAG
AGAAGGTGAAGCATGGAGAGTACTACATCGAAGCGGCGTGGCCATTGGGCACCGCCATTGAGGCTGTCTCACCCAAAAAG
AAGCACCAAGAGACATGAGTTTCCATTGAGATAGCTAGGATATGATGTACTAATATTATGTTGTGTGATGCATGTGTTGT
GCCGGTTTATTTTATTTTACACATGCATGCATATCCGTTGCTAAGTAATAATATAATAGAGGTAGCTTATTAATTTACAT
GGAGGCCGGTGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis