Browse Element(s) Details


OsAffx.3080.1.S1_at

Description tigr:9630.m05522
TID=OsAffx.3080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5557011/11Shugoshin C terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55560Os.13743.1.S1_at11/112+34020405..34024416DNA-binding protein phosphatase 2C, putative, expressed
LOC_Os02g55570OsAffx.3080.1.S1_at11/112+34025278..34028418Shugoshin C terminus family protein, expressed
LOC_Os02g55580OsAffx.12655.1.S1_at11/112+34030746..34031137hypothetical protein
LOC_Os02g55590Os.6403.1.S1_at11/112+34035669..34040394expressed protein
LOC_Os02g55600Os.20333.1.S1_at11/112+34047313..34047921expressed protein
LOC_Os02g55610NANA2+34052272..34053164serine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3080.1.S1_at--781--5471Chr02:34026205..34026229 (25 bp)
GAACTTCCATGTGATGCAATAGCGC
LOC_Os02g55570
OsAffx.3080.1.S1_at--990--10211Chr02:34025867..34025890 (24 bp)
TATTGAGGATCCAGAGCCACCAAGA
LOC_Os02g55570
OsAffx.3080.1.S1_at--699--10671Chr02:34025717..34025741 (25 bp)
TTGAGAGTCGATTGGCCTCGAACAA
LOC_Os02g55570
OsAffx.3080.1.S1_at--700--591Chr02:34025678..34025702 (25 bp)
ATGCCATATGCGACTCAACTTCAAG
LOC_Os02g55570
OsAffx.3080.1.S1_at--26--2531Chr02:34025662..34025686 (25 bp)
AACTTCAAGCGTGCCAATTCAGCAT
LOC_Os02g55570
OsAffx.3080.1.S1_at--53--2731Chr02:34025524..34025548 (25 bp)
AAGACTGGACCCTGGACCTTGGGAG
LOC_Os02g55570
OsAffx.3080.1.S1_at--196--10851Chr02:34025506..34025530 (25 bp)
TTGGGAGGTCACAAATGGCACTTTT
LOC_Os02g55570
OsAffx.3080.1.S1_at--637--7271Chr02:34025475..34025499 (25 bp)
GTCCAGGAAGATACAGTTGCCCCGT
LOC_Os02g55570
OsAffx.3080.1.S1_at--63--2431Chr02:34025399..34025423 (25 bp)
AAAACGACCGCAGTTGCTCGACTAA
LOC_Os02g55570
OsAffx.3080.1.S1_at--290--6671Chr02:34025387..34025411 (25 bp)
GTTGCTCGACTAAACCTTCTGACGA
LOC_Os02g55570
OsAffx.3080.1.S1_at--593--5351Chr02:34025348..34025372 (25 bp)
GAAGATCTTCAGTTGGGAGGCCCTC
LOC_Os02g55570
Target Sequence 
GAACTTCCATGTGATGCAATAGCGCAAGTAGTAGAGGCTCCAGAACTCAAGGAGATACAAGAAGCAGGTTCCAGCGTTGC
TGGAGGTGAGGCGCATAAATTTGATATTGAGGATCCAGAGCCACCAAGAAAATCAATGCGTATTGATGCAAACAAACGGA
AGCTGGAATCATTTGAGAGTCGATTGGCCTCGAACAAAGAGGACTGCATCAATGCCATATGCGACTCAACTTCAAGCGTG
CCAATTCAGCATGAACAAAAGAGAAAATTGTCAAGGAGAAAATCCTCAAGACTGGACCCTGGACCTTGGGAGGTCACAAA
TGGCACTTTTGAAATTGTCCAGGAAGATACAGTTGCCCCGTCTGCTCCTTCCAGTTCAAATGCTTTGATCGAGCAGACCA
AAAATGATATGCAAAACGACCGCAGTTGCTCGACTAAACCTTCTGACGAGCAGGTGATAGGTAGAAGATCTTCAGTTGGG
AGGCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis