Browse Element(s) Details


OsAffx.30808.1.S1_x_at

Description tigr:9639.m00324
TID=OsAffx.30808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04070Os.25811.1.S1_at1/1111+1645485..164785460S acidic ribosomal protein P0, putative, expressed
LOC_Os11g04080Os.20602.2.S1_x_at11/1111+1648846..1651020hAT family dimerisation domain containing protein
LOC_Os11g04090NANA11+1654934..1655377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g04104Os.18177.1.S1_at11/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.2.S1_x_at7/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.3.S1_x_at6/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04120OsAffx.30808.1.S1_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.1.S1_x_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.2.S1_x_at2/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.23391.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.27782.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04130OsAffx.30809.1.S1_x_at11/1111+1673387..1673715nodulin MtN21 family protein, putative
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30808.1.S1_x_at--476--9311Chr11:1671756..1671780 (25 bp)
TCCCGGCTGTTCTCCTGTTCCGGAA
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--496--5472Chr11:1671734..1671758 (25 bp)
GAACTCCGTCTGCTTGCGTACTTGC
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--189--4651Chr11:1671719..1671743 (25 bp)
GCGTACTTGCACGAGTAGGCAGGCA
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--35--1651Chr11:1671679..1671703 (25 bp)
AGCGTATTGGCGCAACTGCTCCTGT
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--896--10231Chr11:1671675..1671699 (25 bp)
TATTGGCGCAACTGCTCCTGTTCTG
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--723--8471Chr11:1671672..1671696 (25 bp)
TGGCGCAACTGCTCCTGTTCTGCTT
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--55--10691Chr11:1671620..1671644 (25 bp)
TTCCATTGGAGATGGCGCACCAGGA
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--134--4351Chr11:1671601..1671625 (25 bp)
CCAGGAGCTGTAGGGAACGGCAGTG
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--709--7311Chr11:1671552..1671576 (25 bp)
GTGCTCCAGGAGACAATACCAACGA
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--488--2631Chr11:1671510..1671533 (24 bp)
AACCTCCTCTGCACTGTTTTCTGGT
LOC_Os11g04120
OsAffx.30808.1.S1_x_at--789--3811Chr11:1671510..1671530 (21 bp)
CTCCTCTGCACTGTTTTCTGGTGGG
LOC_Os11g04120
Target Sequence 
TCCCGGCTGTTCTCCTGTTCCGGAACTCCGTCTGCTTGCGTACTTGCACGAGTAGGCAGGCAATCAAGTTTTTGGGGAGC
GTATTGGCGCAACTGCTCCTGTTCTGCTTCGACTTCTTCCTCTGCATCGCGATGGCTTCCATTGGAGATGGCGCACCAGG
AGCTGTAGGGAACGGCAGTGCTCCAGGAGGAGGAGGGAACGGCAGTGCTCCAGGAGACAATACCAACGAAGGCAATACAA
ATGCCTCAACCTCCTCTGCACTGTTTTCTGGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30808.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis