Browse Element(s) Details


OsAffx.30809.1.S1_x_at

Description tigr:9639.m00325
TID=OsAffx.30809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to nodulin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0413011/11nodulin MtN21 family protein, putative
LOC_Os12g039207/11Nodulin, putative
LOC_Os12g333001/11nodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04080Os.20602.2.S1_x_at11/1111+1648846..1651020hAT family dimerisation domain containing protein
LOC_Os11g04090NANA11+1654934..1655377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g04104Os.18177.1.S1_at11/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.2.S1_x_at7/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.3.S1_x_at6/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04120OsAffx.30808.1.S1_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.1.S1_x_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.2.S1_x_at2/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.23391.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.27782.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04130OsAffx.30809.1.S1_x_at11/1111+1673387..1673715nodulin MtN21 family protein, putative
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30809.1.S1_x_at--409--512Chr12:1621056..1621080 (25 bp)
ATCGTCGTCCAACTGATCTACACTG
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--567--10833Chr12:1621087..1621111 (25 bp)
TTGTGATATCCAAGGCTGCTTTCAA
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--633--912Chr12:1621099..1621123 (25 bp)
AGGCTGCTTTCAACCACGGGATGAA
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--143--3352Chr12:1621113..1621137 (25 bp)
CACGGGATGAACATCTACATCTTCG
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--56--1912Chr12:1621114..1621138 (25 bp)
ACGGGATGAACATCTACATCTTCGT
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--195--3992Chr12:1621115..1621139 (25 bp)
CGGGATGAACATCTACATCTTCGTC
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--723--532Chr12:1621144..1621168 (25 bp)
ATCGCCAGGCAGTTGGCTCCCTCAT
LOC_Os12g03920
OsAffx.30809.1.S1_x_at--925--4291Chr11:1673530..1673554 (25 bp)
CCTCATCTTGCTCCCTACATTTCTT
LOC_Os11g04130
OsAffx.30809.1.S1_x_at--481--4171Chr11:1673542..1673563 (22 bp)
CCCTACATTTCTTCTAGAAAGGCAT
LOC_Os11g04130
OsAffx.30809.1.S1_x_at--953--9871Chr11:1673545..1673595 (25 bp)
TACATTTCTTCTAGAAAGGCATATT
LOC_Os11g04130
OsAffx.30809.1.S1_x_at--249--3156Chr11:1673634..1673658 (25 bp)
AATTCAACAACCTATCATCTTCATG
LOC_Os11g04130
Target Sequence 
ATCGTCGTCCAACTGATCTACACTGGCATGTTTGTGATATCCAAGGCTGCTTTCAACCACGGGATGAACATCTACATCTT
CGTCTTCTATCGCCAGGCAGTTGGCTCCCTCATCTTGCTCCCTACATTTCTTCTAGAAAGGCATATTTCAATTCAACAAC
CTATCATCTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30809.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis