Browse Element(s) Details


OsAffx.30822.1.S1_at

Description tigr:9639.m00417
TID=OsAffx.30822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed
LOC_Os11g04990Os.53519.1.S1_at11/1111+2141080..2143972expressed protein
LOC_Os11g05000OsAffx.30822.1.S1_at11/1111+2150519..2153474expressed protein
LOC_Os11g05010Os.7649.1.S1_at11/1111+2164071..2167034heavy metal-associated domain containing protein, expressed
LOC_Os11g05020Os.57198.1.S1_at11/1111+2172999..2173577expressed protein
LOC_Os11g05020OsAffx.22046.2.S1_s_at2/1111+2172999..2173577expressed protein
LOC_Os11g05030OsAffx.10490.1.S1_at10/1111+2175591..2179079retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30822.1.S1_at--555--2231Chr11:2151566..2151590 (25 bp)
ACAATCGGCGCACCAAAGGGACAGT
LOC_Os11g05000
OsAffx.30822.1.S1_at--356--10471Chr11:2151528..2151552 (25 bp)
TTACGTTACAACGTTGCTCTAGTTA
LOC_Os11g05000
OsAffx.30822.1.S1_at--7--5051Chr11:2151499..2151523 (25 bp)
GAAGGATTACCGTGTTCTCCAACCA
LOC_Os11g05000
OsAffx.30822.1.S1_at--532--2611Chr11:2151464..2151488 (25 bp)
AACCTTATAGGCATTACGCTAGTGA
LOC_Os11g05000
OsAffx.30822.1.S1_at--24--2531Chr11:2151380..2151404 (25 bp)
AACTTCCCATCGGTGTCACACATGA
LOC_Os11g05000
OsAffx.30822.1.S1_at--1106--2171Chr11:2151363..2151387 (25 bp)
ACACATGACCGCAAATTTCTTGGTT
LOC_Os11g05000
OsAffx.30822.1.S1_at--902--3911Chr11:2151186..2151210 (25 bp)
CTGGCATTGGAGGTCCGCTTCTTGG
LOC_Os11g05000
OsAffx.30822.1.S1_at--961--9291Chr11:2151173..2151197 (25 bp)
TCCGCTTCTTGGTTTCGATGGGAAC
LOC_Os11g05000
OsAffx.30822.1.S1_at--725--8051Chr11:2150593..2150617 (25 bp)
GGAGATGACAGTGTTTTCCCTGCTA
LOC_Os11g05000
OsAffx.30822.1.S1_at--729--10651Chr11:2150578..2150602 (25 bp)
TTCCCTGCTAGGTATTATGATGCAT
LOC_Os11g05000
OsAffx.30822.1.S1_at--859--6331Chr11:2150560..2150584 (25 bp)
GATGCATTGCTTTACTGTATCACGT
LOC_Os11g05000
Target Sequence 
ACAATCGGCGCACCAAAGGGACAGTACAACATTATAATTTACGTTACAACGTTGCTCTAGTTAGTGTGAAGGATTACCGT
GTTCTCCAACCAGTAAAAATTCAACCTTATAGGCATTACGCTAGTGAATTACTAGCTGTAGGGTGTATCTTCAAATCTGG
CAGATTAATGGCCTCAAGAGGGCGACAACTTCCCATCGGTGTCACACATGACCGCAAATTTCTTGGTTATTCTCAATGTA
CAATCACTAAGGCTGGCATTGGAGGTCCGCTTCTTGGTTTCGATGGGAACTTTGTTGGCATGAACTTCTACGATGAGGGA
GTAGAAGGAACCCCATTCCTATCATGGTGTGAGATTTGCGAGATCCTTAAGTATTTTAAGACAAAAGAGACTGTTGCTGA
ACATAGGCATGGTAATCCATCTGATGTGCTTGATTGGAAGATCGTTGGAGATGACAGTGTTTTCCCTGCTAGGTATTATG
ATGCATTGCTTTACTGTATCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis