Browse Element(s) Details


OsAffx.30834.1.S1_x_at

Description tigr:9639.m00502
TID=OsAffx.30834.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=XRN 5-3 exonuclease N-terminus, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0584011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05810Os.6844.1.S1_at11/1111+2683848..2684983expressed protein
LOC_Os11g05810Os.6844.1.S1_x_at10/1111+2683848..2684983expressed protein
LOC_Os11g05820Os.55076.1.S1_at11/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05820OsAffx.6089.1.S1_at1/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05830OsAffx.18695.1.S1_at11/1111+2704004..2704342hypothetical protein
LOC_Os11g05840OsAffx.30834.1.S1_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30834.1.S1_x_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840Os.46785.2.S1_x_at3/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30226.2.S1_x_at2/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.5278.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.10573.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.442.1.S1_x_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05850Os.11817.1.S1_a_at11/1111+2726047..2732547cyclin family protein, putative, expressed
LOC_Os11g05860Os.9519.1.S1_at11/1111+2734343..2735367Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05870Os.53155.1.S1_s_at11/1111+2742264..2745674Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30834.1.S1_x_at--752--6771Chr11:2709940..2709964 (25 bp)
GTTACTTCAGAATGTCACAGTGCCT
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--936--5271Chr11:2709934..2709955 (22 bp)
GAATGTCACAGTGCCTTACAAGACT
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--412--1131Chr11:2709809..2709946 (25 bp)
AGTGCCTTACAAGACTGTAACTGAA
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--93--3891Chr11:2709795..2709819 (25 bp)
CTGTAACTGAAGCTGACATTTGTGC
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--434--10291Chr11:2709606..2709750 (25 bp)
TTTCCATGCACAACGTGCAGCAGCA
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--274--9031Chr11:2709600..2709744 (25 bp)
TGCACAACGTGCAGCAGCAGAGGCT
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--821--5991Chr11:2709559..2709583 (25 bp)
GAGACGCCCTGCTGGAAGCCGAGCA
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--73--991Chr11:2709513..2709537 (25 bp)
AGGAGATCAGGAGCGCCGGCACGGG
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--50--1311Chr11:2709472..2709496 (25 bp)
AGAGGTGGAAATATCCCCGTCGCCG
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--930--8431Chr11:2709355..2709379 (25 bp)
GGCCACGGCCAGATGACGACGACGC
LOC_Os11g05840
OsAffx.30834.1.S1_x_at--422--871Chr11:2709279..2709303 (25 bp)
ATGGCGGTGGCCGTGGCTCCTACAA
LOC_Os11g05840
Target Sequence 
GTTACTTCAGAATGTCACAGTGCCTTACAAGACTGTAACTGAAGCTGACATTTGTGCAAGGCCGCTCTGGCACACGCACC
CGTACCCGAAACATCCTGCCCTTTCCATGCACAACGTGCAGCAGCAGAGGCTGCAGAGCAGCAGGCCGGAGACGCCCTGC
TGGAAGCCGAGCACGCCGCCGCCGCCGCGGCGCGAGGAGATCAGGAGCGCCGGCACGGGGTGGCTGGGCCGAGGGAGAGG
TGGAAATATCCCCGTCGCCGTCGCCGCCTCAACCGCCGTCGCCGGAGAGACGCGGCAGTCGTGGAGCAGCAGCAGGTACG
GGCGCGGGCGAGGGAGCGGCGCCACCGCCGTCGGCCACGGCCAGATGACGACGACGCGGCACCAGTGGAGCGGCGGCGGC
GGCTACGGGAGATCATCAGGGGTGGACAATGGCGGTGGCCGTGGCTCCTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30834.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis