Browse Element(s) Details


OsAffx.30843.1.S1_at

Description tigr:9639.m00581
TID=OsAffx.30843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0648011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06430OsAffx.30842.1.S1_at9/1111+3100925..3102996hypothetical protein
LOC_Os11g06440Os.26735.1.S1_at11/1111+3106479..3108332expressed protein
LOC_Os11g06450OsAffx.30841.1.S1_at11/1111+3108856..3109796hypothetical protein
LOC_Os11g06460OsAffx.7016.1.S1_at11/1111+3112202..3114482Ribosome inactivating protein, expressed
LOC_Os11g06470OsAffx.31174.4.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06470OsAffx.31174.5.S1_x_at1/1111+3121149..3125105retrotransposon protein, putative, unclassified
LOC_Os11g06480OsAffx.30843.1.S1_at11/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.18707.1.S1_at2/1111+3127729..3130185hypothetical protein
LOC_Os11g06480OsAffx.15945.1.S1_at1/1111+3127729..3130185hypothetical protein
LOC_Os11g06490OsAffx.18707.1.S1_at8/1111+3130789..3132533Ribosome inactivating protein
LOC_Os11g06500OsAffx.20387.1.S1_x_at1/1111+3133931..3136258retrotransposon protein, putative, unclassified
LOC_Os11g06510OsAffx.7017.1.S1_at11/1111+3138276..3139388hypothetical protein
LOC_Os11g06520NANA11+3143396..3143821Pyruvate decarboxylase isozyme 3, putative
LOC_Os11g06530NANA11+3146073..3146934hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06540OsAffx.18708.1.S1_x_at11/1111+3147469..3147840hypothetical protein
LOC_Os11g06550NANA11+3148556..3149096hypothetical protein
LOC_Os11g06560OsAffx.7019.1.S1_at11/1111+3150825..3151366hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30843.1.S1_at--151--7651Chr11:3128274..3128298 (25 bp)
GGGAGCTTCCTGATCGAAGTTCATA
LOC_Os11g06480
OsAffx.30843.1.S1_at--1121--6731Chr11:3128256..3128280 (25 bp)
GTTCATACCAACAATGCTGGCGATG
LOC_Os11g06480
OsAffx.30843.1.S1_at--446--4731Chr11:3128221..3128245 (25 bp)
GCTGTTTTGGGACTGCTACGACGAC
LOC_Os11g06480
OsAffx.30843.1.S1_at--144--9951Chr11:3128205..3128229 (25 bp)
TACGACGACCGCAACGACCATGAGC
LOC_Os11g06480
OsAffx.30843.1.S1_at--515--5691Chr11:3128167..3128191 (25 bp)
GACTAACACCATCAACACAAGCCTT
LOC_Os11g06480
OsAffx.30843.1.S1_at--226--4131Chr11:3128001..3128025 (25 bp)
CGCAGCGAATGCTTCAGCGTCGGGA
LOC_Os11g06480
OsAffx.30843.1.S1_at--440--7771Chr11:3127891..3127915 (25 bp)
GGTGCCACTTAACGACCAGGTCGAG
LOC_Os11g06480
OsAffx.30843.1.S1_at--1039--2171Chr11:3127817..3127841 (25 bp)
ACACTTTTATCCATCGTATTCTCGT
LOC_Os11g06480
OsAffx.30843.1.S1_at--552--6871Chr11:3127802..3127826 (25 bp)
GTATTCTCGTGTTCTACTCGGGCGG
LOC_Os11g06480
OsAffx.30843.1.S1_at--233--2011Chr11:3127787..3127811 (25 bp)
ACTCGGGCGGTGAACAGCTGGCACA
LOC_Os11g06480
OsAffx.30843.1.S1_at--349--5131Chr11:3127767..3127791 (25 bp)
GCACAACAAATATTCCTCCATGGCA
LOC_Os11g06480
Target Sequence 
GGGAGCTTCCTGATCGAAGTTCATACCAACAATGCTGGCGATGTTGATGGTACGCTGTTTTGGGACTGCTACGACGACCG
CAACGACCATGAGCACGACATAACATTGACTAACACCATCAACACAAGCCTTGGCCCCGTTGAGGTGACCTACGCGGTGC
TGACCGACGCAGTGGAGGCCACCGTGCAGGTCAAGCTGCTGCATGCTTCTCGCCGGATACAGCACCGCCACGCGGTCGCT
GCCACCATCTTCGTCTACGGTGATATCACCGCGCGCAGCGAATGCTTCAGCGTCGGGAGCGTGCTCTTCAGCCGTGGCTC
GCAGAACAAGGTGGCGCTCACCTCGGGCTCCACCCTTCTTCCACTGTCGCGATGCGTTGTTGCGGTGCCACTTAACGACC
AGGTCGAGATAGAGGTGAAGCTGTATGTTGGAACTTCCAGCGAAGAGAGTATCAATTACACTTTTATCCATCGTATTCTC
GTGTTCTACTCGGGCGGTGAACAGCTGGCACAACAAATATTCCTCCATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis