Browse Element(s) Details


OsAffx.30858.1.S1_at

Description tigr:9639.m00662
TID=OsAffx.30858.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0724011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07210Os.27053.2.S1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_s_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07210Os.27053.3.A1_at11/1111+3613072..3616529Leucine Rich Repeat family protein, expressed
LOC_Os11g07220NANA11+3616881..3619029hypothetical protein
LOC_Os11g07230Os.11618.1.S1_at11/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07230Os.11618.2.S1_at8/1111+3629205..3634547Leucine Rich Repeat family protein, expressed
LOC_Os11g07240OsAffx.30858.1.S1_at11/1111+3636770..3639905Leucine Rich Repeat family protein
LOC_Os11g07250Os.27854.1.S1_at1/1111+3645478..3648693Leucine Rich Repeat family protein, expressed
LOC_Os11g07260OsAffx.18719.2.S1_at11/1111+3653727..3657157Leucine Rich Repeat family protein, expressed
LOC_Os11g07270OsAffx.18719.1.S1_at11/1111+3660514..3663672Leucine Rich Repeat family protein, expressed
LOC_Os11g07280Os.11596.1.S1_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed
LOC_Os11g07280Os.11596.1.S2_at11/1111+3663973..3669404Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30858.1.S1_at--864--9991Chr11:3639223..3639247 (25 bp)
TAGCAGACGCGATGGACTACCTCCA
LOC_Os11g07240
OsAffx.30858.1.S1_at--913--3511Chr11:3639324..3639348 (25 bp)
CATGTTGGAGACTTCGGCCTGGTAA
LOC_Os11g07240
OsAffx.30858.1.S1_at--344--9791Chr11:3639346..3639370 (25 bp)
TAAGATTCAATTTTGGTTCCACAAC
LOC_Os11g07240
OsAffx.30858.1.S1_at--961--9211Chr11:3639363..3639387 (25 bp)
TCCACAACAGCATCTCTCGGAGACA
LOC_Os11g07240
OsAffx.30858.1.S1_at--264--8051Chr11:3639381..3639405 (25 bp)
GGAGACACGAACTCAACTTCTTCTG
LOC_Os11g07240
OsAffx.30858.1.S1_at--74--10571Chr11:3639398..3639422 (25 bp)
TTCTTCTGCTGCGATAAAGGGAACA
LOC_Os11g07240
OsAffx.30858.1.S1_at--43--7731Chr11:3639554..3639578 (25 bp)
GGGTGGCCAGGTTTCAACTGCTGCA
LOC_Os11g07240
OsAffx.30858.1.S1_at--1154--9711Chr11:3639728..3639752 (25 bp)
TCAAGAGCTGGGTCTATGCGAAGAA
LOC_Os11g07240
OsAffx.30858.1.S1_at--618--611Chr11:3639743..3639767 (25 bp)
ATGCGAAGAAGCTCCAATGGCTGAT
LOC_Os11g07240
OsAffx.30858.1.S1_at--1116--5691Chr11:3639811..3639835 (25 bp)
GACTATGTTGCACTCGATTGGCACC
LOC_Os11g07240
OsAffx.30858.1.S1_at--410--6611Chr11:3639826..3639850 (25 bp)
GATTGGCACCAAACGAGCGCATCAG
LOC_Os11g07240
Target Sequence 
TAGCAGACGCGATGGACTACCTCCACCATAACAACCAAGGTACTATTGTTCATTGTGATTTGAAGCCAAGCAAAATTCTT
CTCGATGATAATATGACGGCTCATGTTGGAGACTTCGGCCTGGTAAGATTCAATTTTGGTTCCACAACAGCATCTCTCGG
AGACACGAACTCAACTTCTTCTGCTGCGATAAAGGGAACAATTGGATATATTGCTCCAGAATGTGCAGGGGGTGGCCAGG
TTTCAACTGCTGCAGATGTCTATAGCTTTGGAGTTGTTCTCCTCGAGATATTCATAAGGAGGAGGCCAACAGATGACATG
TTCAAGGATGGATTGACCATTGCAAAGTTCACAGAGATCAACATCCCTGATAAGATGCAGGATATTGTTGATCCTCAGCT
GGCTCAAGAGCTGGGTCTATGCGAAGAAGCTCCAATGGCTGATGAAGAAAGTGGAGCGCGTTGCCTGCTTTCTGTGCTTA
ATATTGGACTATGTTGCACTCGATTGGCACCAAACGAGCGCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis