Browse Element(s) Details


OsAffx.30859.2.S1_at

Description tigr:9639.m00673
TID=OsAffx.30859.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0735011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07300NANA11+3676903..3677767retrotransposon protein, putative, LINE subclass
LOC_Os11g07310OsAffx.7034.1.S1_at11/1111+3678455..3679068hypothetical protein
LOC_Os11g07320OsAffx.18721.1.S1_at11/1111+3681740..3683554hypothetical protein
LOC_Os11g07330OsAffx.30859.1.S1_at11/1111+3685238..3686956hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07340OsAffx.21500.2.S1_x_at11/1111+3698852..3699721hypothetical protein
LOC_Os11g07350OsAffx.30859.2.S1_at11/1111+3700852..3701844hypothetical protein
LOC_Os11g07360OsAffx.18723.1.S1_at11/1111+3703861..3705546hypothetical protein
LOC_Os11g07370OsAffx.18724.1.S1_at11/1111+3707085..3708963hypothetical protein
LOC_Os11g07380OsAffx.18725.1.S1_at11/1111+3710749..3712469hypothetical protein
LOC_Os11g07390OsAffx.30860.1.S1_at11/1111+3714694..3715340hypothetical protein
LOC_Os11g07390Os.56305.1.S1_at1/1111+3714694..3715340hypothetical protein
LOC_Os11g07400Os.56305.1.S1_at11/1111+3717816..3719505expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30859.2.S1_at--551--8311Chr11:3701277..3701301 (25 bp)
GGCTACAAGCGGGATTACGCCATTA
LOC_Os11g07350
OsAffx.30859.2.S1_at--953--8091Chr11:3701251..3701275 (25 bp)
GGACCGAAGAGTTTGTGCCACCGAC
LOC_Os11g07350
OsAffx.30859.2.S1_at--632--4211Chr11:3701219..3701243 (25 bp)
CCGCGCTCAAGTTCATCTACATCAT
LOC_Os11g07350
OsAffx.30859.2.S1_at--63--8231Chr11:3701169..3701193 (25 bp)
GGCACAACCTTCTGCGACAATTCCA
LOC_Os11g07350
OsAffx.30859.2.S1_at--395--3911Chr11:3701122..3701146 (25 bp)
CTGGATACTCAGGATGGACGACGAC
LOC_Os11g07350
OsAffx.30859.2.S1_at--1045--5651Chr11:3701094..3701118 (25 bp)
GACATGGTTTGGACGATGGACGCCA
LOC_Os11g07350
OsAffx.30859.2.S1_at--712--3111Chr11:3701008..3701032 (25 bp)
AATATTCCCCGTCGCAAGCATGGAC
LOC_Os11g07350
OsAffx.30859.2.S1_at--306--2711Chr11:3700993..3701017 (25 bp)
AAGCATGGACGATCCCCATCTCATC
LOC_Os11g07350
OsAffx.30859.2.S1_at--935--451Chr11:3700976..3701000 (25 bp)
ATCTCATCTGCTTCATGGTGCAGGA
LOC_Os11g07350
OsAffx.30859.2.S1_at--6--6491Chr11:3700925..3700949 (25 bp)
GATACTGCCACATCAAGAGAACATG
LOC_Os11g07350
OsAffx.30859.2.S1_at--726--6251Chr11:3700900..3700924 (25 bp)
GATGGTCATGTTCGACACAAGGAGC
LOC_Os11g07350
Target Sequence 
GGCTACAAGCGGGATTACGCCATTACGGACCGAAGAGTTTGTGCCACCGACGGCGGCGCCGCGCTCAAGTTCATCTACAT
CATCTCCCGCTGTTGCTGCGGCCTCCCCGGCACAACCTTCTGCGACAATTCCAAGGAGGCCTTCATCATCAAGACCTGGA
TACTCAGGATGGACGACGACGACGACATGGTTTGGACGATGGACGCCATGGTCGACGCCACCGAGCTCTGGTCTCTCCAT
GCCTGCGCTGGCCTCCCACAAGCCAAACCAATATTCCCCGTCGCAAGCATGGACGATCCCCATCTCATCTGCTTCATGGT
GCAGGAGCGAGAATTCGAGGGAAGAAGAAGAAGATACTGCCACATCAAGAGAACATGGATGGTCATGTTCGACACAAGGA
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30859.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis