Browse Element(s) Details


OsAffx.30864.1.S1_at

Description tigr:9639.m00691
TID=OsAffx.30864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0753010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07480Os.54544.1.S1_at11/1111+3785243..3789715WD-repeat protein 20, putative, expressed
LOC_Os11g07490Os.21809.1.S1_at9/1111+3791883..3797010RNA recognition motif family protein, expressed
LOC_Os11g07500Os.14143.1.S1_at11/1111+3797426..3804489DEAD/DEAH box helicase family protein, expressed
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified
LOC_Os11g07530OsAffx.30864.1.S1_at10/1111+3813721..3815661hypothetical protein
LOC_Os11g07540OsAffx.7037.1.S1_at11/1111+3817727..3819518hypothetical protein
LOC_Os11g07550OsAffx.30864.2.S1_at10/1111+3820417..3822034hypothetical protein
LOC_Os11g07560OsAffx.29033.1.S1_at1/1111+3823371..3824145hypothetical protein
LOC_Os11g07570OsAffx.30865.1.S1_at11/1111+3825735..3827323hypothetical protein
LOC_Os11g07580OsAffx.7038.1.S1_s_at11/1111+3829992..3830656expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30864.1.S1_at--338--7151Chr11:3814150..3814174 (25 bp)
GTCTTCTTCGTGGAGGCCATGCCCG
LOC_Os11g07530
OsAffx.30864.1.S1_at--953--6431Chr11:3814179..3814203 (25 bp)
GATCACCTACCTCGCGTGGTCGCTA
LOC_Os11g07530
OsAffx.30864.1.S1_at--873--7491Chr11:3814194..3814218 (25 bp)
GTGGTCGCTACAGCCGAACGAGAAC
LOC_Os11g07530
OsAffx.30864.1.S1_at--537--9471Chr11:3814325..3814349 (25 bp)
TCTGGGCCCTGTTCGTGAGGAGCAT
LOC_Os11g07530
OsAffx.30864.1.S1_at--687--3871Chr11:3814333..3814357 (25 bp)
CTGTTCGTGAGGAGCATTCTGCTGC
LOC_Os11g07530
OsAffx.30864.1.S1_at--354--5931Chr11:3814344..3814368 (25 bp)
GAGCATTCTGCTGCGCGGGTGTTTC
LOC_Os11g07530
OsAffx.30864.1.S1_at--571--8651Chr11:3814406..3814430 (25 bp)
TGGGCATGTCGTGGCTGTTCGTCCC
LOC_Os11g07530
OsAffx.30864.1.S1_at--227--3951Chr11:3814440..3814464 (25 bp)
CGGCATCGTTCTCCGGCAAATCAAC
LOC_Os11g07530
OsAffx.30864.1.S1_at--1011--2231Chr11:3814457..3814481 (25 bp)
AAATCAACGCCGTTCTCTACGGCCA
LOC_Os11g07530
OsAffx.30864.1.S1_at--929--3471Chr11:3814546..3814569 (24 bp)
CAGGAGCTCATGCTCATCATACGGA
LOC_Os11g07530
OsAffx.30864.1.S1_at--575--411NONE
ATCATACGGAGCCAGCCTCGGACGG
NONE
Target Sequence 
GTCTTCTTCGTGGAGGCCATGCCCGCCGCGATCACCTACCTCGCGTGGTCGCTACAGCCGAACGAGAACGACGCGCCGCC
GCCGCAGCCGACGGGGCACGACGACGACGACGAGCCGTCGCCGGCGTCGATCGTGGTGTGCGTGGCGGCGACGTTGTCGG
GGCCCTACCTCGGCGTCTGGGCCCTGTTCGTGAGGAGCATTCTGCTGCGCGGGTGTTTCGTCGCCGGAGACGCCATGTGC
GTCGCCGCCGTGTGCGTGGGCATGTCGTGGCTGTTCGTCCCGGTCGTCGCCGGCATCGTTCTCCGGCAAATCAACGCCGT
TCTCTACGGCCACTGGCTCTACGGCATCGCCATGGCCGGCTTCCTCGGCTACAGCCTTGCCGTCAACGAGCGCTACCAGG
AGCTCATGCTCATCATACGGAGCCAGCCTCGGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis