Browse Element(s) Details


OsAffx.30873.1.S1_at

Description tigr:9639.m00748
TID=OsAffx.30873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ankyrin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0807011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08050OsAffx.18740.1.S1_at11/1111+4180094..4187936hypothetical protein
LOC_Os11g08050Os.34854.1.S1_at10/1111+4180094..4187936hypothetical protein
LOC_Os11g08050OsAffx.32294.1.S1_at1/1111+4180094..4187936hypothetical protein
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein
LOC_Os11g08080Os.8874.1.S1_at11/1111+4216741..4225344SWIRM domain containing protein, expressed
LOC_Os11g08090Os.18349.1.A1_s_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08090OsAffx.18741.1.S1_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30873.1.S1_at--841--31Chr11:4208647..4208671 (25 bp)
ATTGGTGGCTGTTCTCATTGCCGCC
LOC_Os11g08070
OsAffx.30873.1.S1_at--795--3231Chr11:4208566..4208590 (25 bp)
CAACCTCAGGGACAACATCTCGTTC
LOC_Os11g08070
OsAffx.30873.1.S1_at--119--7131Chr11:4208490..4208514 (25 bp)
GTCATCCTGCTCGTATACGGGAAGA
LOC_Os11g08070
OsAffx.30873.1.S1_at--919--6171Chr11:4208329..4208353 (25 bp)
GAGGACGGTCTTGATCACCATGTTC
LOC_Os11g08070
OsAffx.30873.1.S1_at--692--8591Chr11:4208303..4208327 (25 bp)
TGGTCATCTATGTGTGCTTCAACGC
LOC_Os11g08070
OsAffx.30873.1.S1_at--251--7331Chr11:4208290..4208314 (25 bp)
GTGCTTCAACGCCTTGATTTTGTGG
LOC_Os11g08070
OsAffx.30873.1.S1_at--956--7911Chr11:4208255..4208279 (25 bp)
GGATTGATCCTGCAGCGACGACGTA
LOC_Os11g08070
OsAffx.30873.1.S1_at--640--2791Chr11:4208181..4208205 (25 bp)
AAGAGGCGATATCCGTTCCTCGGCG
LOC_Os11g08070
OsAffx.30873.1.S1_at--1037--4591Chr11:4208159..4208183 (25 bp)
GCGACTCCCTATACAGCTTGCTTAT
LOC_Os11g08070
OsAffx.30873.1.S1_at--651--1551Chr11:4208145..4208169 (25 bp)
AGCTTGCTTATCTTCTCGGTTATAA
LOC_Os11g08070
OsAffx.30873.1.S1_at--188--391Chr11:4208112..4208136 (25 bp)
ATCACAGCATTTGTCGTTCTGGTTG
LOC_Os11g08070
Target Sequence 
ATTGGTGGCTGTTCTCATTGCCGCCGCCGTCTTCGCCGTCGGGTTCAACATGCCCGGCGGGTACGGGGACGACGGCACGG
CCAACCTCAGGGACAACATCTCGTTCAAATACTTCATGGTCCTCGACACCTTCGCCATCACCACGTCAGTGGTCGCCGTC
ATCCTGCTCGTATACGGGAAGACGGCGGCGGCGGCGCACCTCGCCGTCTCGTGGAAGAGCTTCGTGGTGACGCTGCAGTG
CATCTGGGTCTCGCTCGTCAGCCTGATCCTGGCCTTCTTCTCCGCCATCCATGCCGTCGTCATCGCAACCTCGAGCTCGA
GGACGGTCTTGATCACCATGTTCTTGGTCATCTATGTGTGCTTCAACGCCTTGATTTTGTGGATCGAGAAGTGGATTGAT
CCTGCAGCGACGACGTATCGCGCGGTTTGGAGGTTCGTGTGGCGTGGTCGCCATGCTCACGCCATCAAGAGGCGATATCC
GTTCCTCGGCGACTCCCTATACAGCTTGCTTATCTTCTCGGTTATAATTATAAATATCACAGCATTTGTCGTTCTGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis