Browse Element(s) Details


OsAffx.30922.1.S1_s_at

Description tigr:9639.m01030
TID=OsAffx.30922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1088011/11hypothetical protein
LOC_Os11g1094011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10840OsAffx.18790.1.S1_at5/1111+5969788..5969991hypothetical protein
LOC_Os11g10850OsAffx.18790.1.S1_at11/1111+5973885..5974454Dirigent-like protein
LOC_Os11g10860Os.47463.1.S1_x_at6/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10860Os.14491.2.S1_x_at5/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10870Os.55238.1.S1_at11/1111+5991976..5992860Dirigent-like protein, expressed
LOC_Os11g10880OsAffx.30922.1.S1_s_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_x_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.18792.1.S1_x_at5/1111+5994073..5994651hypothetical protein
LOC_Os11g10890OsAffx.7068.1.S1_at11/1111+5997375..5997976expressed protein
LOC_Os11g10900Os.27691.1.S1_x_at1/1111+6006118..6011823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10910Os.54534.1.S1_at10/1111+6016440..6019565Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30922.1.S1_s_at--248--8232Chr11:6034976..6035000 (25 bp)
GGCAATGAGTCTGAATCTGCACTGC
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--350--3792Chr11:6035004..6035028 (25 bp)
CTCGTCAGCTTGATCGTCCGGACAG
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--53--9672Chr11:6035008..6035032 (25 bp)
TCAGCTTGATCGTCCGGACAGCAGT
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--233--10792Chr11:6035013..6035037 (25 bp)
TTGATCGTCCGGACAGCAGTGGCTT
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--946--6392Chr11:6035015..6035039 (25 bp)
GATCGTCCGGACAGCAGTGGCTTGC
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--813--7252Chr11:6035019..6035043 (25 bp)
GTCCGGACAGCAGTGGCTTGCCTAC
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--925--8132Chr11:6035023..6035047 (25 bp)
GGACAGCAGTGGCTTGCCTACTACT
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--517--2152Chr11:6035025..6035049 (25 bp)
ACAGCAGTGGCTTGCCTACTACTCA
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--722--1092Chr11:6035030..6035054 (25 bp)
AGTGGCTTGCCTACTACTCACCAAT
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--34--9192Chr11:6035037..6035061 (25 bp)
TGCCTACTACTCACCAATCATGGAT
LOC_Os11g10940
OsAffx.30922.1.S1_s_at--1156--9892Chr11:6035041..6035065 (25 bp)
TACTACTCACCAATCATGGATTTAC
LOC_Os11g10940
Target Sequence 
GGCAATGAGTCTGAATCTGCACTGCTGCCCACTCCTCGTCAGCTTGATCGTCCGGACAGCAGTGGCTTGCCTACTACTCA
CCAATCATGGATTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30922.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis