Browse Element(s) Details


OsAffx.30925.1.S1_at

Description tigr:9639.m01066
TID=OsAffx.30925.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1123011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11180OsAffx.18795.1.S1_at10/1111+6185658..6187151hypothetical protein
LOC_Os11g11200OsAffx.30924.1.S1_at11/1111+6191162..6193212hypothetical protein
LOC_Os11g11210Os.52283.1.S1_at11/1111+6196555..6200088ATP-dependent protease La, putative
LOC_Os11g11220OsAffx.10943.1.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.1.S1_x_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.2.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein
LOC_Os11g11240NANA11+6214176..6217130hypothetical protein
LOC_Os11g11250Os.52908.1.S1_at7/1111+6220825..6221968expressed protein
LOC_Os11g11256NANA11+6223738..6226441hypothetical protein
LOC_Os11g11262NANA11+6228159..6229269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11270OsAffx.18796.1.S1_at11/1111+6233231..6233735hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30925.1.S1_at--727--491Chr11:6212062..6212086 (25 bp)
ATCGGCAAGCCAACAGCTGGATCCA
LOC_Os11g11230
OsAffx.30925.1.S1_at--993--4371Chr11:6212053..6212077 (25 bp)
CCAACAGCTGGATCCATGTGGTGGC
LOC_Os11g11230
OsAffx.30925.1.S1_at--755--6511Chr11:6212001..6212025 (25 bp)
GATTTCACCCGCTTGGGTTTTGCCG
LOC_Os11g11230
OsAffx.30925.1.S1_at--119--6811Chr11:6211985..6212009 (25 bp)
GTTTTGCCGCCAAATCCGGAAGAGG
LOC_Os11g11230
OsAffx.30925.1.S1_at--1149--1411Chr11:6211951..6211975 (25 bp)
AGAAAGCGGAGCTGCCATGCGCCGC
LOC_Os11g11230
OsAffx.30925.1.S1_at--945--4271Chr11:6211921..6211945 (25 bp)
CCTGCCATGGTTGGGTCGCCGGCAA
LOC_Os11g11230
OsAffx.30925.1.S1_at--444--4051Chr11:6211883..6211907 (25 bp)
CGATCTCGCCTCACTGCGGGAGATG
LOC_Os11g11230
OsAffx.30925.1.S1_at--150--1991Chr11:6211871..6211895 (25 bp)
ACTGCGGGAGATGGCTCGCTTCACG
LOC_Os11g11230
OsAffx.30925.1.S1_at--210--7111Chr11:6211842..6211866 (25 bp)
GTCAGCGCCGTCTCTCTTGCTACTG
LOC_Os11g11230
OsAffx.30925.1.S1_at--347--4131Chr11:6211800..6211824 (25 bp)
CGCTACTCCGTCAGCGTGGCGGGAT
LOC_Os11g11230
OsAffx.30925.1.S1_at--149--4291Chr11:6211740..6211764 (25 bp)
CCTCCACGATGAGGCGCGACAGAGG
LOC_Os11g11230
Target Sequence 
ATCGGCAAGCCAACAGCTGGATCCATGTGGTGGCGGAGAAGGAGGAGACAGGGGATTTGGGGATTTCACCCGCTTGGGTT
TTGCCGCCAAATCCGGAAGAGGAGGGAGAGGAGAAAGCGGAGCTGCCATGCGCCGCCGCCGCCTGCCATGGTTGGGTCGC
CGGCAAGCTCTCTCTCCTCCGATCTCGCCTCACTGCGGGAGATGGCTCGCTTCACGCGCCGTCAGCGCCGTCTCTCTTGC
TACTGCCACCGCTCCACACGTCCGCTACTCCGTCAGCGTGGCGGGATGGCGCCGAGCACGCCGATGGCTGTGCGGTTCTC
GTCCTCCACGATGAGGCGCGACAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis