Browse Element(s) Details


OsAffx.30935.1.S1_at

Description tigr:9639.m01112
TID=OsAffx.30935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1167011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11620OsAffx.30930.1.S1_s_at11/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.2.S1_at9/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620OsAffx.30930.1.S1_at2/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11620Os.53177.1.S1_s_at1/1111+6457691..6460748ZmEBE-1 protein, putative
LOC_Os11g11630NANA11+6467013..6467767hypothetical protein
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein
LOC_Os11g11660Os.12698.1.S1_at2/1111+6476188..6478113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11670OsAffx.30935.1.S1_at11/1111+6480185..6480935hypothetical protein
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30935.1.S1_at--72--10111Chr11:6480509..6480708 (25 bp)
TATGCCGAGGGTTACACAATATGGA
LOC_Os11g11670
OsAffx.30935.1.S1_at--909--6131Chr11:6480691..6480714 (24 bp)
GAGGGTTACACAATATGGACTTATC
LOC_Os11g11670
OsAffx.30935.1.S1_at--1013--3291Chr11:6480698..6480722 (25 bp)
CACAATATGGACTTATCATGACAAA
LOC_Os11g11670
OsAffx.30935.1.S1_at--894--2331Chr11:6480720..6480744 (25 bp)
AAAGATGATCACATTGAGGCTGCTG
LOC_Os11g11670
OsAffx.30935.1.S1_at--441--711Chr11:6480724..6480748 (25 bp)
ATGATCACATTGAGGCTGCTGATGG
LOC_Os11g11670
OsAffx.30935.1.S1_at--941--3311Chr11:6480729..6480753 (25 bp)
CACATTGAGGCTGCTGATGGTGATA
LOC_Os11g11670
OsAffx.30935.1.S1_at--901--5571Chr11:6480783..6480807 (25 bp)
GAAATGTTACGCCATACAGAACCTG
LOC_Os11g11670
OsAffx.30935.1.S1_at--797--731Chr11:6480786..6480810 (25 bp)
ATGTTACGCCATACAGAACCTGATG
LOC_Os11g11670
OsAffx.30935.1.S1_at--783--9951Chr11:6480790..6480814 (25 bp)
TACGCCATACAGAACCTGATGTGCT
LOC_Os11g11670
OsAffx.30935.1.S1_at--765--331Chr11:6480796..6480820 (25 bp)
ATACAGAACCTGATGTGCTAATGGG
LOC_Os11g11670
OsAffx.30935.1.S1_at--33--6811Chr11:6480832..6480856 (25 bp)
GTTTAGATAATGTTGGAGGTACACC
LOC_Os11g11670
Target Sequence 
TATGCCGAGGGTTACACAATATGGACTTATCATGACAAAGATGATCACATTGAGGCTGCTGATGGTGATAGTTGTGGTGA
TAATATCATTGATTTAGAGGAAATGTTACGCCATACAGAACCTGATGTGCTAATGGGGTCGGTTAGGGGTTTAGATAATG
TTGGAGGTACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis